Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 RPS27P22-201ENST00000478056 241 ntBASIC1.63□□□□□ -2.15
LHX1P48742 RNU6-408P-201ENST00000515910 100 ntBASIC1.63□□□□□ -2.15
LHX1P48742 Y_RNA.661-201ENST00000516003 99 ntBASIC1.63□□□□□ -2.15
LHX1P48742 U6.73-201ENST00000619194 103 ntBASIC1.63□□□□□ -2.15
LHX1P48742 AC138305.3-201ENST00000624988 240 ntBASIC1.63□□□□□ -2.15
LHX1P48742 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
LHX1P48742 RNU1-42P-201ENST00000364033 160 ntBASIC1.62□□□□□ -2.15
LHX1P48742 Y_RNA.315-201ENST00000365117 102 ntBASIC1.62□□□□□ -2.15
LHX1P48742 RNU6-1310P-201ENST00000384153 107 ntBASIC1.62□□□□□ -2.15
LHX1P48742 MIR30A-201ENST00000385092 71 ntBASIC1.62□□□□□ -2.15
LHX1P48742 Y_RNA.579-201ENST00000390939 94 ntBASIC1.62□□□□□ -2.15
LHX1P48742 RNU6-360P-201ENST00000390944 104 ntBASIC1.62□□□□□ -2.15
LHX1P48742 SNORD78.2-201ENST00000391076 69 ntBASIC1.62□□□□□ -2.15
LHX1P48742 AC010469.2-201ENST00000496412 480 ntBASIC1.62□□□□□ -2.15
LHX1P48742 RNU6-976P-201ENST00000516086 111 ntBASIC1.62□□□□□ -2.15
LHX1P48742 SNORA31.24-201ENST00000517232 57 ntBASIC1.62□□□□□ -2.15
LHX1P48742 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.62□□□□□ -2.15
LHX1P48742 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.62□□□□□ -2.15
LHX1P48742 AP002001.1-203ENST00000534002 267 ntBASIC1.62□□□□□ -2.15
LHX1P48742 AC023157.2-201ENST00000540596 141 ntBASIC1.62□□□□□ -2.15
LHX1P48742 AC006600.1-201ENST00000572529 153 ntBASIC1.62□□□□□ -2.15
LHX1P48742 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.62□□□□□ -2.15
LHX1P48742 MIR4438-201ENST00000585271 93 ntBASIC1.62□□□□□ -2.15
LHX1P48742 VN1R91P-201ENST00000594377 169 ntBASIC1.62□□□□□ -2.15
LHX1P48742 AL645939.4-201ENST00000604495 135 ntBASIC1.62□□□□□ -2.15
LHX1P48742 MIR8074-201ENST00000615081 81 ntBASIC1.62□□□□□ -2.15
LHX1P48742 SNORA20B-201ENST00000384220 132 ntBASIC1.61□□□□□ -2.15
LHX1P48742 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
LHX1P48742 RNU4-62P-201ENST00000410125 130 ntBASIC1.61□□□□□ -2.15
LHX1P48742 RPS20P15-201ENST00000412792 311 ntBASIC1.61□□□□□ -2.15
LHX1P48742 FTH1P12-201ENST00000432137 551 ntBASIC1.61□□□□□ -2.15
LHX1P48742 AC005002.2-201ENST00000438228 269 ntBASIC1.61□□□□□ -2.15
LHX1P48742 MRPS10P1-201ENST00000448483 130 ntBASIC1.61□□□□□ -2.15
LHX1P48742 AC027575.1-201ENST00000481064 460 ntBASIC1.61□□□□□ -2.15
LHX1P48742 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.61□□□□□ -2.15
LHX1P48742 MIR3198-2-201ENST00000577868 80 ntBASIC1.61□□□□□ -2.15
LHX1P48742 AL133255.1-201ENST00000606374 441 ntBASIC1.61□□□□□ -2.15
LHX1P48742 AL512598.1-201ENST00000610158 273 ntBASIC1.61□□□□□ -2.15
LHX1P48742 U6.108-201ENST00000637764 58 ntBASIC1.61□□□□□ -2.15
LHX1P48742 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
LHX1P48742 AP000648.3-201ENST00000623539 4507 ntBASIC1.61□□□□□ -2.15
LHX1P48742 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.61□□□□□ -2.15
LHX1P48742 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
LHX1P48742 MIR378A-201ENST00000362177 66 ntBASIC1.6□□□□□ -2.15
LHX1P48742 Y_RNA.252-201ENST00000364556 101 ntBASIC1.6□□□□□ -2.15
LHX1P48742 Y_RNA.496-201ENST00000384444 101 ntBASIC1.6□□□□□ -2.15
LHX1P48742 RNA5SP109-201ENST00000391010 116 ntBASIC1.6□□□□□ -2.15
LHX1P48742 AL355796.1-201ENST00000406706 323 ntBASIC1.6□□□□□ -2.15
LHX1P48742 COX6CP10-201ENST00000416832 224 ntBASIC1.6□□□□□ -2.15
LHX1P48742 HSPE1P21-201ENST00000438283 308 ntBASIC1.6□□□□□ -2.15
LHX1P48742 CHEK2P4-201ENST00000450340 246 ntBASIC1.6□□□□□ -2.15
LHX1P48742 snoU13.27-201ENST00000459278 104 ntBASIC1.6□□□□□ -2.15
LHX1P48742 RPS26P45-201ENST00000471748 340 ntBASIC1.6□□□□□ -2.15
LHX1P48742 AC008834.1-201ENST00000511612 175 ntBASIC1.6□□□□□ -2.15
LHX1P48742 RNU7-99P-201ENST00000516271 62 ntBASIC1.6□□□□□ -2.15
LHX1P48742 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.6□□□□□ -2.15
LHX1P48742 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.6□□□□□ -2.15
LHX1P48742 AC092447.9-201ENST00000603395 144 ntBASIC1.6□□□□□ -2.15
LHX1P48742 AC104985.2-201ENST00000620598 500 ntBASIC1.6□□□□□ -2.15
LHX1P48742 MIR4272-201ENST00000635924 64 ntBASIC1.6□□□□□ -2.15
LHX1P48742 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
LHX1P48742 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
LHX1P48742 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
LHX1P48742 MIR424-201ENST00000362227 98 ntBASIC1.59□□□□□ -2.15
LHX1P48742 Y_RNA.5-201ENST00000362334 102 ntBASIC1.59□□□□□ -2.15
LHX1P48742 Y_RNA.27-201ENST00000362540 103 ntBASIC1.59□□□□□ -2.15
LHX1P48742 Y_RNA.39-201ENST00000362620 98 ntBASIC1.59□□□□□ -2.15
LHX1P48742 RNU6-961P-201ENST00000363893 105 ntBASIC1.59□□□□□ -2.15
LHX1P48742 RNU6-454P-201ENST00000364292 107 ntBASIC1.59□□□□□ -2.15
LHX1P48742 Y_RNA.431-201ENST00000384086 102 ntBASIC1.59□□□□□ -2.15
LHX1P48742 MIR1323-201ENST00000408090 73 ntBASIC1.59□□□□□ -2.15
LHX1P48742 MIR1304-201ENST00000408243 91 ntBASIC1.59□□□□□ -2.15
LHX1P48742 MIR1267-201ENST00000408723 78 ntBASIC1.59□□□□□ -2.15
LHX1P48742 MTCO3P19-201ENST00000415864 321 ntBASIC1.59□□□□□ -2.15
LHX1P48742 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.59□□□□□ -2.15
LHX1P48742 AC092473.1-201ENST00000441098 221 ntBASIC1.59□□□□□ -2.15
LHX1P48742 Y_RNA.638-201ENST00000459374 113 ntBASIC1.59□□□□□ -2.15
LHX1P48742 RPL26P26-201ENST00000480251 434 ntBASIC1.59□□□□□ -2.15
LHX1P48742 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.59□□□□□ -2.15
LHX1P48742 RNU6-1170P-201ENST00000515974 106 ntBASIC1.59□□□□□ -2.15
LHX1P48742 RNU6-1012P-201ENST00000516606 109 ntBASIC1.59□□□□□ -2.15
LHX1P48742 RNU7-128P-201ENST00000517247 62 ntBASIC1.59□□□□□ -2.15
LHX1P48742 AC015720.1-201ENST00000565251 277 ntBASIC1.59□□□□□ -2.15
LHX1P48742 AL138825.1-201ENST00000618587 192 ntBASIC1.59□□□□□ -2.15
LHX1P48742 AC091925.1-201ENST00000623204 462 ntBASIC1.59□□□□□ -2.15
LHX1P48742 U6.115-201ENST00000636045 103 ntBASIC1.59□□□□□ -2.15
LHX1P48742 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
LHX1P48742 RNU6-271P-201ENST00000363858 105 ntBASIC1.58□□□□□ -2.16
LHX1P48742 Y_RNA.197-201ENST00000364004 102 ntBASIC1.58□□□□□ -2.16
LHX1P48742 RNU6-407P-201ENST00000365280 104 ntBASIC1.58□□□□□ -2.16
LHX1P48742 SNORA4.2-201ENST00000365313 147 ntBASIC1.58□□□□□ -2.16
LHX1P48742 RNU1-115P-201ENST00000365329 160 ntBASIC1.58□□□□□ -2.16
LHX1P48742 RNU6-708P-201ENST00000384217 107 ntBASIC1.58□□□□□ -2.16
LHX1P48742 BTF3P4-201ENST00000418852 495 ntBASIC1.58□□□□□ -2.16
LHX1P48742 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.58□□□□□ -2.16
LHX1P48742 JTBP1-201ENST00000441314 247 ntBASIC1.58□□□□□ -2.16
LHX1P48742 AC023790.1-201ENST00000482174 347 ntBASIC1.58□□□□□ -2.16
LHX1P48742 RNA5SP20-201ENST00000515976 84 ntBASIC1.58□□□□□ -2.16
LHX1P48742 AC023442.1-201ENST00000531247 422 ntBASIC1.58□□□□□ -2.16
LHX1P48742 MIR4709-201ENST00000577272 72 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms