Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 Y_RNA.39-201ENST00000362620 98 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 RNU6-862P-201ENST00000362804 105 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 RNU6-1019P-201ENST00000364424 107 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 Y_RNA.395-201ENST00000383945 109 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 RNU6-1310P-201ENST00000384153 107 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 Y_RNA.460-201ENST00000384255 102 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 AC009310.1-201ENST00000414414 451 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 AC018865.2-201ENST00000423631 129 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 AC099677.2-201ENST00000436385 175 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 RNU7-169P-201ENST00000459456 61 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 AC010900.2-201ENST00000604508 210 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 AC069114.2-201ENST00000604699 304 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 AL080274.1-201ENST00000605565 220 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 AL050343.2-201ENST00000607338 280 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 AC090574.1-201ENST00000623186 233 ntBASIC1.61□□□□□ -2.15
NEDD4P46934 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
NEDD4P46934 RNU6-797P-201ENST00000363101 109 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 Y_RNA.112-201ENST00000363250 102 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 RNY1P10-201ENST00000363268 113 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 RNA5SP100-201ENST00000410903 110 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 RNA5SP59-201ENST00000410922 110 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 AC016909.1-201ENST00000415916 166 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.6□□□□□ -2.15
NEDD4P46934 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.6□□□□□ -2.15
NEDD4P46934 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.6□□□□□ -2.15
NEDD4P46934 HMGN2P34-201ENST00000437647 269 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 AC069257.2-201ENST00000441819 155 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.6□□□□□ -2.15
NEDD4P46934 RNA5SP57-201ENST00000459463 123 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
NEDD4P46934 Y_RNA.661-201ENST00000516003 99 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 MIR4299-201ENST00000577899 72 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 MIR5094-201ENST00000578766 85 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 AL357075.2-201ENST00000614906 189 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 AC006435.5-201ENST00000624486 112 ntBASIC1.6□□□□□ -2.15
NEDD4P46934 Y_RNA.27-201ENST00000362540 103 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 SNORA72.2-201ENST00000365028 127 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 RNA5SP475-201ENST00000410568 110 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 RNU1-123P-201ENST00000458950 160 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 Y_RNA.639-201ENST00000458981 102 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 RNU6-625P-201ENST00000459412 107 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 HMGN1P13-201ENST00000505795 138 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 AC010598.1-201ENST00000510378 103 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 AC024995.1-201ENST00000523014 93 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 AC022432.1-201ENST00000595739 310 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 AC092447.9-201ENST00000603395 144 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 MIR7974-201ENST00000615835 79 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 AC090971.5-201ENST00000621102 293 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 MIR4272-201ENST00000635924 64 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 MIR3674-201ENST00000636576 68 ntBASIC1.59□□□□□ -2.16
NEDD4P46934 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.59□□□□□ -2.16
NEDD4P46934 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
NEDD4P46934 AC010615.1-201ENST00000594254 1764 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
NEDD4P46934 RNY3P11-201ENST00000364153 102 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 Y_RNA.287-201ENST00000364853 94 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 SNORD42.2-201ENST00000365570 69 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 SNORD78.2-201ENST00000391076 69 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 EBAG9P1-201ENST00000418955 543 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 FCF1P4-201ENST00000448326 183 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 SUMO1P2-201ENST00000452524 304 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 AC112492.4-201ENST00000456549 352 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 AL163540.1-201ENST00000485382 386 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 SNORA40.14-201ENST00000516543 86 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.58□□□□□ -2.16
NEDD4P46934 AL137100.2-201ENST00000555786 315 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.58□□□□□ -2.16
NEDD4P46934 AC022254.1-201ENST00000567857 235 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 AL160413.1-201ENST00000622780 310 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.58□□□□□ -2.16
NEDD4P46934 AL606534.2-204ENST00000635008 178 ntBASIC1.58□□□□□ -2.16
NEDD4P46934 RNU6-112P-201ENST00000363599 104 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 Y_RNA.419-201ENST00000384041 102 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 Y_RNA.496-201ENST00000384444 101 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 Y_RNA.526-201ENST00000384572 110 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 Y_RNA.535-201ENST00000384612 99 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 RNU6-997P-201ENST00000384725 107 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 MIR520A-201ENST00000384862 85 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
NEDD4P46934 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.57□□□□□ -2.16
NEDD4P46934 AL137792.2-201ENST00000443484 235 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.57□□□□□ -2.16
NEDD4P46934 RNU6-475P-201ENST00000516073 104 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 RNU6-1012P-201ENST00000516606 109 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 RNU4-77P-201ENST00000516692 156 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.57□□□□□ -2.16
NEDD4P46934 AC084364.2-201ENST00000546924 395 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 AC006600.1-201ENST00000572529 153 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.57□□□□□ -2.16
NEDD4P46934 MIR4713-201ENST00000582691 75 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 MIR3660-201ENST00000584845 100 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.57□□□□□ -2.16
NEDD4P46934 uc_338.22-201ENST00000622722 187 ntBASIC1.57□□□□□ -2.16
NEDD4P46934 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
NEDD4P46934 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 254.6 ms