Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.64□□□□□ -2.15
SOX3P41225 SNORD65B-201ENST00000459126 73 ntBASIC1.64□□□□□ -2.15
SOX3P41225 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.64□□□□□ -2.15
SOX3P41225 AC040926.1-201ENST00000530195 238 ntBASIC1.64□□□□□ -2.15
SOX3P41225 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.64□□□□□ -2.15
SOX3P41225 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.64□□□□□ -2.15
SOX3P41225 SUB1P4-201ENST00000566062 339 ntBASIC1.64□□□□□ -2.15
SOX3P41225 MIR3684-201ENST00000579779 74 ntBASIC1.64□□□□□ -2.15
SOX3P41225 MIR4769-201ENST00000584126 77 ntBASIC1.64□□□□□ -2.15
SOX3P41225 AL096840.1-201ENST00000603287 93 ntBASIC1.64□□□□□ -2.15
SOX3P41225 AC104695.3-201ENST00000604052 296 ntBASIC1.64□□□□□ -2.15
SOX3P41225 AL121655.1-201ENST00000605811 308 ntBASIC1.64□□□□□ -2.15
SOX3P41225 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.64□□□□□ -2.15
SOX3P41225 MIR8081-201ENST00000611533 95 ntBASIC1.64□□□□□ -2.15
SOX3P41225 AL773524.1-201ENST00000614065 229 ntBASIC1.64□□□□□ -2.15
SOX3P41225 AC011476.5-201ENST00000615594 130 ntBASIC1.64□□□□□ -2.15
SOX3P41225 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.64□□□□□ -2.15
SOX3P41225 AC007742.2-201ENST00000618226 398 ntBASIC1.64□□□□□ -2.15
SOX3P41225 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
SOX3P41225 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
SOX3P41225 RNU6-626P-201ENST00000363354 107 ntBASIC1.63□□□□□ -2.15
SOX3P41225 RNA5SP363-201ENST00000365072 115 ntBASIC1.63□□□□□ -2.15
SOX3P41225 Y_RNA.424-201ENST00000384063 103 ntBASIC1.63□□□□□ -2.15
SOX3P41225 Y_RNA.458-201ENST00000384240 102 ntBASIC1.63□□□□□ -2.15
SOX3P41225 MRPL42P3-201ENST00000401492 326 ntBASIC1.63□□□□□ -2.15
SOX3P41225 MIR1253-201ENST00000408273 105 ntBASIC1.63□□□□□ -2.15
SOX3P41225 CST2P1-201ENST00000425770 87 ntBASIC1.63□□□□□ -2.15
SOX3P41225 HMGB3P17-201ENST00000504195 649 ntBASIC1.63□□□□□ -2.15
SOX3P41225 AC010598.1-201ENST00000510378 103 ntBASIC1.63□□□□□ -2.15
SOX3P41225 SCARNA15.1-201ENST00000516384 125 ntBASIC1.63□□□□□ -2.15
SOX3P41225 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.63□□□□□ -2.15
SOX3P41225 AC004467.1-201ENST00000615678 330 ntBASIC1.63□□□□□ -2.15
SOX3P41225 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
SOX3P41225 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
SOX3P41225 RNA5SP432-201ENST00000362480 116 ntBASIC1.62□□□□□ -2.15
SOX3P41225 RNU6-1266P-201ENST00000362794 105 ntBASIC1.62□□□□□ -2.15
SOX3P41225 RNA5SP99-201ENST00000364020 114 ntBASIC1.62□□□□□ -2.15
SOX3P41225 Y_RNA.202-201ENST00000364083 110 ntBASIC1.62□□□□□ -2.15
SOX3P41225 RNU1-96P-201ENST00000364163 162 ntBASIC1.62□□□□□ -2.15
SOX3P41225 RNU4-50P-201ENST00000364361 141 ntBASIC1.62□□□□□ -2.15
SOX3P41225 RNU6-450P-201ENST00000364654 107 ntBASIC1.62□□□□□ -2.15
SOX3P41225 SNORA33.2-201ENST00000365413 134 ntBASIC1.62□□□□□ -2.15
SOX3P41225 RNU6-20P-201ENST00000384106 107 ntBASIC1.62□□□□□ -2.15
SOX3P41225 SNORA8-201ENST00000384574 139 ntBASIC1.62□□□□□ -2.15
SOX3P41225 RNU6-1011P-201ENST00000384668 107 ntBASIC1.62□□□□□ -2.15
SOX3P41225 RNU6-417P-201ENST00000384712 107 ntBASIC1.62□□□□□ -2.15
SOX3P41225 AL627390.1-201ENST00000396055 340 ntBASIC1.62□□□□□ -2.15
SOX3P41225 AC113618.1-201ENST00000416747 285 ntBASIC1.62□□□□□ -2.15
SOX3P41225 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.62□□□□□ -2.15
SOX3P41225 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.62□□□□□ -2.15
SOX3P41225 SNORA25.15-201ENST00000516487 89 ntBASIC1.62□□□□□ -2.15
SOX3P41225 RNU6-250P-201ENST00000516958 103 ntBASIC1.62□□□□□ -2.15
SOX3P41225 AC022616.4-201ENST00000522985 181 ntBASIC1.62□□□□□ -2.15
SOX3P41225 AC055872.1-201ENST00000570978 278 ntBASIC1.62□□□□□ -2.15
SOX3P41225 MIR5094-201ENST00000578766 85 ntBASIC1.62□□□□□ -2.15
SOX3P41225 AL390123.1-201ENST00000603216 237 ntBASIC1.62□□□□□ -2.15
SOX3P41225 AL021879.1-201ENST00000611756 288 ntBASIC1.62□□□□□ -2.15
SOX3P41225 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.62□□□□□ -2.15
SOX3P41225 AC006435.5-201ENST00000624486 112 ntBASIC1.62□□□□□ -2.15
SOX3P41225 U6.115-201ENST00000636045 103 ntBASIC1.62□□□□□ -2.15
SOX3P41225 AC245060.5-201ENST00000610778 3293 ntBASIC1.62□□□□□ -2.15
SOX3P41225 Y_RNA.158-201ENST00000363651 101 ntBASIC1.61□□□□□ -2.15
SOX3P41225 RNU6-1019P-201ENST00000364424 107 ntBASIC1.61□□□□□ -2.15
SOX3P41225 Y_RNA.243-201ENST00000364481 109 ntBASIC1.61□□□□□ -2.15
SOX3P41225 AL355796.1-201ENST00000406706 323 ntBASIC1.61□□□□□ -2.15
SOX3P41225 RNA5SP100-201ENST00000410903 110 ntBASIC1.61□□□□□ -2.15
SOX3P41225 RNA5SP59-201ENST00000410922 110 ntBASIC1.61□□□□□ -2.15
SOX3P41225 RNU6-130P-201ENST00000411112 103 ntBASIC1.61□□□□□ -2.15
SOX3P41225 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.61□□□□□ -2.15
SOX3P41225 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.61□□□□□ -2.15
SOX3P41225 U8.20-201ENST00000459445 131 ntBASIC1.61□□□□□ -2.15
SOX3P41225 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.61□□□□□ -2.15
SOX3P41225 Y_RNA.721-201ENST00000517207 102 ntBASIC1.61□□□□□ -2.15
SOX3P41225 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.61□□□□□ -2.15
SOX3P41225 MIR4680-201ENST00000580906 66 ntBASIC1.61□□□□□ -2.15
SOX3P41225 MIR4719-201ENST00000585233 84 ntBASIC1.61□□□□□ -2.15
SOX3P41225 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.61□□□□□ -2.15
SOX3P41225 AC010900.2-201ENST00000604508 210 ntBASIC1.61□□□□□ -2.15
SOX3P41225 AC016925.2-201ENST00000605108 242 ntBASIC1.61□□□□□ -2.15
SOX3P41225 AC005828.6-201ENST00000606610 232 ntBASIC1.61□□□□□ -2.15
SOX3P41225 Y_RNA.772-201ENST00000606692 102 ntBASIC1.61□□□□□ -2.15
SOX3P41225 AL627230.6-201ENST00000611129 280 ntBASIC1.61□□□□□ -2.15
SOX3P41225 PART1_1.1-201ENST00000611761 217 ntBASIC1.61□□□□□ -2.15
SOX3P41225 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.61□□□□□ -2.15
SOX3P41225 AL353997.5-201ENST00000618886 171 ntBASIC1.61□□□□□ -2.15
SOX3P41225 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.61□□□□□ -2.15
SOX3P41225 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.61□□□□□ -2.15
SOX3P41225 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
SOX3P41225 Y_RNA.101-201ENST00000363154 102 ntBASIC1.6□□□□□ -2.15
SOX3P41225 Y_RNA.230-201ENST00000364348 109 ntBASIC1.6□□□□□ -2.15
SOX3P41225 SNORA63C-201ENST00000364578 129 ntBASIC1.6□□□□□ -2.15
SOX3P41225 AC117470.1-201ENST00000381974 330 ntBASIC1.6□□□□□ -2.15
SOX3P41225 Y_RNA.527-201ENST00000384573 102 ntBASIC1.6□□□□□ -2.15
SOX3P41225 Y_RNA.551-201ENST00000384661 102 ntBASIC1.6□□□□□ -2.15
SOX3P41225 MIR515-2-201ENST00000384883 83 ntBASIC1.6□□□□□ -2.15
SOX3P41225 MIR515-1-201ENST00000384884 83 ntBASIC1.6□□□□□ -2.15
SOX3P41225 RNU6-823P-201ENST00000391042 103 ntBASIC1.6□□□□□ -2.15
SOX3P41225 AC009310.1-201ENST00000414414 451 ntBASIC1.6□□□□□ -2.15
SOX3P41225 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.6□□□□□ -2.15
SOX3P41225 RNU6-966P-201ENST00000516479 104 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms