Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RPL39P39-201ENST00000455840 151 ntBASIC0.72□□□□□ -2.29
USF1P22415 RNU7-66P-201ENST00000459469 62 ntBASIC0.72□□□□□ -2.29
USF1P22415 SNORD124-201ENST00000459577 104 ntBASIC0.72□□□□□ -2.29
USF1P22415 AP000870.1-201ENST00000472927 406 ntBASIC0.72□□□□□ -2.29
USF1P22415 AC097462.1-201ENST00000514125 324 ntBASIC0.72□□□□□ -2.29
USF1P22415 RNA5SP436-201ENST00000516020 115 ntBASIC0.72□□□□□ -2.29
USF1P22415 ACA64.5-201ENST00000516207 127 ntBASIC0.72□□□□□ -2.29
USF1P22415 RNU6-947P-201ENST00000516264 106 ntBASIC0.72□□□□□ -2.29
USF1P22415 AC091144.1-201ENST00000519573 138 ntBASIC0.72□□□□□ -2.29
USF1P22415 AC027419.1-201ENST00000522976 328 ntBASIC0.72□□□□□ -2.29
USF1P22415 RPL21P9-201ENST00000556149 474 ntBASIC0.72□□□□□ -2.29
USF1P22415 AC080078.2-201ENST00000603766 501 ntBASIC0.72□□□□□ -2.29
USF1P22415 AC092954.2-201ENST00000609103 430 ntBASIC0.72□□□□□ -2.29
USF1P22415 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.72□□□□□ -2.29
USF1P22415 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.72□□□□□ -2.29
USF1P22415 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
USF1P22415 Y_RNA.124-201ENST00000363339 93 ntBASIC0.71□□□□□ -2.3
USF1P22415 Y_RNA.363-201ENST00000365529 113 ntBASIC0.71□□□□□ -2.3
USF1P22415 Y_RNA.393-201ENST00000383936 102 ntBASIC0.71□□□□□ -2.3
USF1P22415 SNORA80D-201ENST00000384488 135 ntBASIC0.71□□□□□ -2.3
USF1P22415 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
USF1P22415 AL355796.1-201ENST00000406706 323 ntBASIC0.71□□□□□ -2.3
USF1P22415 AC004941.2-201ENST00000427009 228 ntBASIC0.71□□□□□ -2.3
USF1P22415 CALM2P4-201ENST00000430810 426 ntBASIC0.71□□□□□ -2.3
USF1P22415 MTATP6P13-201ENST00000438531 667 ntBASIC0.71□□□□□ -2.3
USF1P22415 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC0.71□□□□□ -2.3
USF1P22415 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.71□□□□□ -2.3
USF1P22415 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC0.71□□□□□ -2.3
USF1P22415 AC022493.2-201ENST00000506122 481 ntBASIC0.71□□□□□ -2.3
USF1P22415 RNU6-917P-201ENST00000516294 104 ntBASIC0.71□□□□□ -2.3
USF1P22415 RNU6-107P-201ENST00000516643 102 ntBASIC0.71□□□□□ -2.3
USF1P22415 RNU2-56P-201ENST00000516826 190 ntBASIC0.71□□□□□ -2.3
USF1P22415 RNU7-172P-201ENST00000517125 64 ntBASIC0.71□□□□□ -2.3
USF1P22415 AL590705.4-201ENST00000532209 134 ntBASIC0.71□□□□□ -2.3
USF1P22415 MIR3684-201ENST00000579779 74 ntBASIC0.71□□□□□ -2.3
USF1P22415 MIR3672-201ENST00000584290 82 ntBASIC0.71□□□□□ -2.3
USF1P22415 MIR6779-201ENST00000617283 64 ntBASIC0.71□□□□□ -2.3
USF1P22415 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.71□□□□□ -2.3
USF1P22415 SNORD114-2-201ENST00000363953 78 ntBASIC0.7□□□□□ -2.3
USF1P22415 Y_RNA.212-201ENST00000364177 102 ntBASIC0.7□□□□□ -2.3
USF1P22415 Y_RNA.256-201ENST00000364594 104 ntBASIC0.7□□□□□ -2.3
USF1P22415 U8.16-201ENST00000391279 133 ntBASIC0.7□□□□□ -2.3
USF1P22415 AF228730.1-201ENST00000397972 663 ntBASIC0.7□□□□□ -2.3
USF1P22415 AC114482.1-201ENST00000418010 247 ntBASIC0.7□□□□□ -2.3
USF1P22415 USMG5P1-201ENST00000425964 177 ntBASIC0.7□□□□□ -2.3
USF1P22415 RNU6-1132P-201ENST00000459214 107 ntBASIC0.7□□□□□ -2.3
USF1P22415 PDCD5P2-201ENST00000507570 312 ntBASIC0.7□□□□□ -2.3
USF1P22415 Y_RNA.683-201ENST00000516508 93 ntBASIC0.7□□□□□ -2.3
USF1P22415 Y_RNA.704-201ENST00000516851 102 ntBASIC0.7□□□□□ -2.3
USF1P22415 RNU6-341P-201ENST00000516973 96 ntBASIC0.7□□□□□ -2.3
USF1P22415 AL121579.1-201ENST00000555129 305 ntBASIC0.7□□□□□ -2.3
USF1P22415 FAM71BP1-201ENST00000604431 523 ntBASIC0.7□□□□□ -2.3
USF1P22415 RNU6-596P-201ENST00000365395 98 ntBASIC0.69□□□□□ -2.3
USF1P22415 SNORD116-11-201ENST00000383882 92 ntBASIC0.69□□□□□ -2.3
USF1P22415 Y_RNA.414-201ENST00000384011 101 ntBASIC0.69□□□□□ -2.3
USF1P22415 MIR216A-201ENST00000385063 110 ntBASIC0.69□□□□□ -2.3
USF1P22415 MIR146A-201ENST00000385201 99 ntBASIC0.69□□□□□ -2.3
USF1P22415 MIR100-201ENST00000385259 80 ntBASIC0.69□□□□□ -2.3
USF1P22415 RNU6-780P-201ENST00000391030 104 ntBASIC0.69□□□□□ -2.3
USF1P22415 RNU2-64P-201ENST00000411315 191 ntBASIC0.69□□□□□ -2.3
USF1P22415 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.69□□□□□ -2.3
USF1P22415 AC006461.1-201ENST00000412637 326 ntBASIC0.69□□□□□ -2.3
USF1P22415 AL606490.4-201ENST00000423117 127 ntBASIC0.69□□□□□ -2.3
USF1P22415 MTCO2P7-201ENST00000446518 666 ntBASIC0.69□□□□□ -2.3
USF1P22415 OR9P1P-201ENST00000496431 281 ntBASIC0.69□□□□□ -2.3
USF1P22415 RNU7-12P-201ENST00000516030 62 ntBASIC0.69□□□□□ -2.3
USF1P22415 MIR4273-201ENST00000582824 84 ntBASIC0.69□□□□□ -2.3
USF1P22415 AC068790.6-201ENST00000602558 258 ntBASIC0.69□□□□□ -2.3
USF1P22415 RNU6-451P-201ENST00000362921 107 ntBASIC0.68□□□□□ -2.3
USF1P22415 RNY3P3-201ENST00000363816 102 ntBASIC0.68□□□□□ -2.3
USF1P22415 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
USF1P22415 Y_RNA.490-201ENST00000384413 102 ntBASIC0.68□□□□□ -2.3
USF1P22415 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.68□□□□□ -2.3
USF1P22415 MTATP6P17-201ENST00000431030 672 ntBASIC0.68□□□□□ -2.3
USF1P22415 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.68□□□□□ -2.3
USF1P22415 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.68□□□□□ -2.3
USF1P22415 RNU6-1114P-201ENST00000516022 107 ntBASIC0.68□□□□□ -2.3
USF1P22415 AP002004.2-201ENST00000531656 154 ntBASIC0.68□□□□□ -2.3
USF1P22415 AC133485.1-201ENST00000567176 124 ntBASIC0.68□□□□□ -2.3
USF1P22415 AC138907.6-201ENST00000568401 126 ntBASIC0.68□□□□□ -2.3
USF1P22415 RN7SL793P-201ENST00000583259 296 ntBASIC0.68□□□□□ -2.3
USF1P22415 AC091178.2-201ENST00000584401 117 ntBASIC0.68□□□□□ -2.3
USF1P22415 AC106800.4-201ENST00000614905 153 ntBASIC0.68□□□□□ -2.3
USF1P22415 ZNF299P-201ENST00000406845 1804 ntBASIC0.67□□□□□ -2.3
USF1P22415 Y_RNA.267-201ENST00000364679 109 ntBASIC0.67□□□□□ -2.3
USF1P22415 Y_RNA.405-201ENST00000383979 100 ntBASIC0.67□□□□□ -2.3
USF1P22415 Y_RNA.451-201ENST00000384200 100 ntBASIC0.67□□□□□ -2.3
USF1P22415 RNU6-281P-201ENST00000384212 103 ntBASIC0.67□□□□□ -2.3
USF1P22415 SNORA20B-201ENST00000384220 132 ntBASIC0.67□□□□□ -2.3
USF1P22415 Y_RNA.524-201ENST00000384564 100 ntBASIC0.67□□□□□ -2.3
USF1P22415 Y_RNA.533-201ENST00000384596 114 ntBASIC0.67□□□□□ -2.3
USF1P22415 Y_RNA.561-201ENST00000384694 100 ntBASIC0.67□□□□□ -2.3
USF1P22415 RNU6-332P-201ENST00000391193 108 ntBASIC0.67□□□□□ -2.3
USF1P22415 RNA5SP482-201ENST00000391269 118 ntBASIC0.67□□□□□ -2.3
USF1P22415 MTCYBP4-201ENST00000401524 249 ntBASIC0.67□□□□□ -2.3
USF1P22415 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC0.67□□□□□ -2.3
USF1P22415 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.67□□□□□ -2.3
USF1P22415 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.67□□□□□ -2.3
USF1P22415 MTND1P1-201ENST00000445453 368 ntBASIC0.67□□□□□ -2.3
USF1P22415 AC093850.1-201ENST00000454121 251 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms