Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 MTCO2P19-201ENST00000427513 598 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.18□□□□□ -2.38
LIMS3P0CW19 AL606489.2-201ENST00000433886 234 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.18□□□□□ -2.38
LIMS3P0CW19 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC0.18□□□□□ -2.38
LIMS3P0CW19 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.18□□□□□ -2.38
LIMS3P0CW19 RNU6-1208P-201ENST00000459588 107 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 MTCO2P30-201ENST00000503662 364 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 AC018710.1-201ENST00000506509 158 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 RNU7-41P-201ENST00000515917 61 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 SNORA74.3-201ENST00000517108 154 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.18□□□□□ -2.38
LIMS3P0CW19 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC0.18□□□□□ -2.38
LIMS3P0CW19 AC010999.1-201ENST00000611856 324 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 AC243829.6-201ENST00000612652 106 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 SNORA27.1-201ENST00000362604 124 ntBASIC0.17□□□□□ -2.38
LIMS3P0CW19 Y_RNA.169-201ENST00000363745 96 ntBASIC0.17□□□□□ -2.38
LIMS3P0CW19 SNORD113.3-201ENST00000364630 78 ntBASIC0.17□□□□□ -2.38
LIMS3P0CW19 RNY1P8-201ENST00000383970 114 ntBASIC0.17□□□□□ -2.38
LIMS3P0CW19 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.17□□□□□ -2.38
LIMS3P0CW19 RPL30P16-201ENST00000419341 429 ntBASIC0.17□□□□□ -2.38
LIMS3P0CW19 PIGPP3-201ENST00000425307 415 ntBASIC0.17□□□□□ -2.38
LIMS3P0CW19 ZNF736P8Y-201ENST00000451913 669 ntBASIC0.17□□□□□ -2.38
LIMS3P0CW19 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.17□□□□□ -2.38
LIMS3P0CW19 MIR4300-201ENST00000581016 96 ntBASIC0.17□□□□□ -2.38
LIMS3P0CW19 FAM157A-202ENST00000615155 405 ntBASIC0.17□□□□□ -2.38
LIMS3P0CW19 AC243829.3-201ENST00000622177 108 ntBASIC0.17□□□□□ -2.38
LIMS3P0CW19 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.17□□□□□ -2.38
LIMS3P0CW19 MIR1-1-201ENST00000362147 71 ntBASIC0.16□□□□□ -2.38
LIMS3P0CW19 SNORD14.1-201ENST00000365609 90 ntBASIC0.16□□□□□ -2.38
LIMS3P0CW19 Y_RNA.381-201ENST00000365666 102 ntBASIC0.16□□□□□ -2.38
LIMS3P0CW19 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.16□□□□□ -2.38
LIMS3P0CW19 MIR548J-201ENST00000408833 112 ntBASIC0.16□□□□□ -2.38
LIMS3P0CW19 PCNPP5-201ENST00000452246 481 ntBASIC0.16□□□□□ -2.38
LIMS3P0CW19 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC0.16□□□□□ -2.38
LIMS3P0CW19 RNU7-187P-201ENST00000458985 68 ntBASIC0.16□□□□□ -2.38
LIMS3P0CW19 RPL30P10-201ENST00000488148 337 ntBASIC0.16□□□□□ -2.38
LIMS3P0CW19 AC108740.1-201ENST00000498629 225 ntBASIC0.16□□□□□ -2.38
LIMS3P0CW19 RNU6-496P-201ENST00000516145 99 ntBASIC0.16□□□□□ -2.38
LIMS3P0CW19 MIR5000-201ENST00000577717 103 ntBASIC0.16□□□□□ -2.38
LIMS3P0CW19 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.15□□□□□ -2.38
LIMS3P0CW19 RNU6-349P-201ENST00000362402 107 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 Y_RNA.191-201ENST00000363972 113 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 RNU6-128P-201ENST00000383976 107 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 MIR15B-201ENST00000385045 98 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 MIR1298-201ENST00000408783 112 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 AL353193.1-201ENST00000421444 268 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 AL137792.2-201ENST00000443484 235 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 PCMTD1P1-201ENST00000455560 355 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 Y_RNA.683-201ENST00000516508 93 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 RNU7-43P-201ENST00000516554 64 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 RNU6-1096P-201ENST00000517089 102 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.15□□□□□ -2.39
LIMS3P0CW19 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.15□□□□□ -2.39
LIMS3P0CW19 AC134698.4-201ENST00000523451 826 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 AC023442.1-201ENST00000531247 422 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 MIR4764-201ENST00000580680 88 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 MIR6788-201ENST00000618842 66 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 AC121333.1-201ENST00000567488 2709 ntBASIC0.15□□□□□ -2.39
LIMS3P0CW19 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
LIMS3P0CW19 RNU4-20P-201ENST00000365601 151 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 VTRNA1-3-201ENST00000365645 89 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 MIR136-201ENST00000385207 82 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 AC243428.1-201ENST00000421099 264 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 RPS3AP17-201ENST00000472594 777 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 AC114811.1-201ENST00000507207 168 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.14□□□□□ -2.39
LIMS3P0CW19 POLR3GP2-201ENST00000588366 668 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 AC007684.1-201ENST00000609671 477 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 AL050303.3-201ENST00000613704 284 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 AL603755.1-201ENST00000619504 163 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 AC091931.1-201ENST00000623488 728 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 AC127459.3-201ENST00000624328 466 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 AC008133.2-201ENST00000624540 351 ntBASIC0.14□□□□□ -2.39
LIMS3P0CW19 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
LIMS3P0CW19 SNORD68-201ENST00000363214 84 ntBASIC0.13□□□□□ -2.39
LIMS3P0CW19 Y_RNA.167-201ENST00000363735 109 ntBASIC0.13□□□□□ -2.39
LIMS3P0CW19 RNU6-1105P-201ENST00000384774 107 ntBASIC0.13□□□□□ -2.39
LIMS3P0CW19 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.13□□□□□ -2.39
LIMS3P0CW19 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.13□□□□□ -2.39
LIMS3P0CW19 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.13□□□□□ -2.39
LIMS3P0CW19 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.13□□□□□ -2.39
LIMS3P0CW19 AC074133.1-201ENST00000515696 183 ntBASIC0.13□□□□□ -2.39
LIMS3P0CW19 AC093027.1-201ENST00000546698 429 ntBASIC0.13□□□□□ -2.39
LIMS3P0CW19 MIR4528-201ENST00000577763 90 ntBASIC0.13□□□□□ -2.39
LIMS3P0CW19 MIR4711-201ENST00000578274 70 ntBASIC0.13□□□□□ -2.39
LIMS3P0CW19 MIR151B-201ENST00000584249 96 ntBASIC0.13□□□□□ -2.39
LIMS3P0CW19 AC104695.3-201ENST00000604052 296 ntBASIC0.13□□□□□ -2.39
LIMS3P0CW19 MIR6504-201ENST00000613520 61 ntBASIC0.13□□□□□ -2.39
LIMS3P0CW19 MIR6513-201ENST00000621188 64 ntBASIC0.13□□□□□ -2.39
LIMS3P0CW19 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
LIMS3P0CW19 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.12□□□□□ -2.39
LIMS3P0CW19 Y_RNA.1-201ENST00000352915 104 ntBASIC0.12□□□□□ -2.39
LIMS3P0CW19 Y_RNA.151-201ENST00000363566 112 ntBASIC0.12□□□□□ -2.39
LIMS3P0CW19 RNU4-45P-201ENST00000365469 141 ntBASIC0.12□□□□□ -2.39
LIMS3P0CW19 MIR573-201ENST00000384964 99 ntBASIC0.12□□□□□ -2.39
LIMS3P0CW19 MIR516B2-201ENST00000385190 85 ntBASIC0.12□□□□□ -2.39
LIMS3P0CW19 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.12□□□□□ -2.39
LIMS3P0CW19 RNU6-1304P-201ENST00000411374 106 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 176.4 ms