Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNU7-121P-201ENST00000516604 62 ntBASIC2.63□□□□□ -1.99
COL3A1P02461 SNORA31.23-201ENST00000517219 133 ntBASIC2.63□□□□□ -1.99
COL3A1P02461 MIR4431-201ENST00000579990 94 ntBASIC2.63□□□□□ -1.99
COL3A1P02461 SCARNA17.4-201ENST00000614296 143 ntBASIC2.63□□□□□ -1.99
COL3A1P02461 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.63□□□□□ -1.99
COL3A1P02461 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
COL3A1P02461 RNU6-275P-201ENST00000364910 107 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 RNU6-215P-201ENST00000365169 102 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 MIR569-201ENST00000385228 96 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 MIR888-201ENST00000401186 77 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 NDUFS5P4-201ENST00000412983 318 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 RPL39P29-201ENST00000447779 157 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 AL021397.1-201ENST00000451806 248 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 Y_RNA.637-201ENST00000459424 114 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 RPL23AP42-201ENST00000471152 471 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
COL3A1P02461 RNA5SP445-201ENST00000515889 115 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 RNU6-919P-201ENST00000516731 104 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 RNU6-1073P-201ENST00000517182 106 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 MIR4744-201ENST00000581563 82 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 SNRPGP20-201ENST00000604477 205 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 XIST_intron.1-201ENST00000619444 68 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 MIR3674-201ENST00000636576 68 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 MIR3529-201ENST00000637713 78 ntBASIC2.62□□□□□ -1.99
COL3A1P02461 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL3A1P02461 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.61□□□□□ -1.99
COL3A1P02461 MIR539-201ENST00000365690 78 ntBASIC2.61□□□□□ -1.99
COL3A1P02461 AL035461.1-201ENST00000421490 332 ntBASIC2.61□□□□□ -1.99
COL3A1P02461 RPL21P66-201ENST00000426566 466 ntBASIC2.61□□□□□ -1.99
COL3A1P02461 AL137159.1-201ENST00000452808 512 ntBASIC2.61□□□□□ -1.99
COL3A1P02461 RNA5SP272-201ENST00000516095 111 ntBASIC2.61□□□□□ -1.99
COL3A1P02461 RNU6-966P-201ENST00000516479 104 ntBASIC2.61□□□□□ -1.99
COL3A1P02461 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.61□□□□□ -1.99
COL3A1P02461 DEFB117-201ENST00000602356 141 ntBASIC2.61□□□□□ -1.99
COL3A1P02461 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.61□□□□□ -1.99
COL3A1P02461 AP000553.5-201ENST00000641933 54 ntBASIC2.61□□□□□ -1.99
COL3A1P02461 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 RNU1-62P-201ENST00000362599 164 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 Y_RNA.71-201ENST00000362892 104 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 Y_RNA.127-201ENST00000363386 109 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 RNU6-103P-201ENST00000363686 107 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 RNU6-884P-201ENST00000363889 107 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 RNU6-324P-201ENST00000363957 106 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 Y_RNA.261-201ENST00000364631 102 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 Y_RNA.329-201ENST00000365209 107 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 U3.15-201ENST00000365398 212 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 RNU6-44P-201ENST00000384045 107 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 SNORA26.9-201ENST00000391322 122 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.6□□□□□ -1.99
COL3A1P02461 AC074290.1-201ENST00000448883 135 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.6□□□□□ -1.99
COL3A1P02461 AC022616.8-201ENST00000533569 253 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 DNAJC19P2-201ENST00000593340 302 ntBASIC2.6□□□□□ -1.99
COL3A1P02461 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.6□□□□□ -1.99
COL3A1P02461 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
COL3A1P02461 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL3A1P02461 SNORA7.2-201ENST00000364446 145 ntBASIC2.59□□□□□ -1.99
COL3A1P02461 RNU6-818P-201ENST00000364837 108 ntBASIC2.59□□□□□ -1.99
COL3A1P02461 Y_RNA.508-201ENST00000384502 114 ntBASIC2.59□□□□□ -1.99
COL3A1P02461 RNU6-578P-201ENST00000390980 103 ntBASIC2.59□□□□□ -1.99
COL3A1P02461 SNORA26.3-201ENST00000391119 136 ntBASIC2.59□□□□□ -1.99
COL3A1P02461 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.59□□□□□ -1.99
COL3A1P02461 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.59□□□□□ -1.99
COL3A1P02461 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.59□□□□□ -1.99
COL3A1P02461 AC025033.1-201ENST00000463883 194 ntBASIC2.59□□□□□ -1.99
COL3A1P02461 RN7SKP164-201ENST00000516138 266 ntBASIC2.59□□□□□ -1.99
COL3A1P02461 RNU6-436P-201ENST00000516171 114 ntBASIC2.59□□□□□ -1.99
COL3A1P02461 AC115990.1-201ENST00000526957 301 ntBASIC2.59□□□□□ -1.99
COL3A1P02461 AL078604.3-201ENST00000615580 211 ntBASIC2.59□□□□□ -1.99
COL3A1P02461 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.59□□□□□ -1.99
COL3A1P02461 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -1.99
COL3A1P02461 RNU6-899P-201ENST00000363947 107 ntBASIC2.58□□□□□ -2
COL3A1P02461 MIR493-201ENST00000385254 89 ntBASIC2.58□□□□□ -2
COL3A1P02461 AC096649.2-201ENST00000416186 393 ntBASIC2.58□□□□□ -2
COL3A1P02461 AC019205.3-201ENST00000424573 156 ntBASIC2.58□□□□□ -2
COL3A1P02461 MTND4LP9-201ENST00000427694 174 ntBASIC2.58□□□□□ -2
COL3A1P02461 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.58□□□□□ -2
COL3A1P02461 U8.19-201ENST00000459095 133 ntBASIC2.58□□□□□ -2
COL3A1P02461 RNU6-1211P-201ENST00000459179 105 ntBASIC2.58□□□□□ -2
COL3A1P02461 AC114982.1-201ENST00000469402 321 ntBASIC2.58□□□□□ -2
COL3A1P02461 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.58□□□□□ -2
COL3A1P02461 RPL36AP21-201ENST00000490372 323 ntBASIC2.58□□□□□ -2
COL3A1P02461 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.58□□□□□ -2
COL3A1P02461 AC107027.2-201ENST00000512197 115 ntBASIC2.58□□□□□ -2
COL3A1P02461 AC136628.3-201ENST00000521868 290 ntBASIC2.58□□□□□ -2
COL3A1P02461 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.58□□□□□ -2
COL3A1P02461 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.58□□□□□ -2
COL3A1P02461 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.58□□□□□ -2
COL3A1P02461 CYP4A27P-201ENST00000567218 190 ntBASIC2.58□□□□□ -2
COL3A1P02461 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.58□□□□□ -2
COL3A1P02461 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL3A1P02461 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL3A1P02461 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
COL3A1P02461 RNU6-199P-201ENST00000362954 107 ntBASIC2.58□□□□□ -2
COL3A1P02461 RNU6-801P-201ENST00000364087 105 ntBASIC2.58□□□□□ -2
COL3A1P02461 RNU6-1325P-201ENST00000364905 105 ntBASIC2.58□□□□□ -2
COL3A1P02461 Y_RNA.337-201ENST00000365312 102 ntBASIC2.58□□□□□ -2
COL3A1P02461 RNU6-763P-201ENST00000390865 106 ntBASIC2.58□□□□□ -2
COL3A1P02461 RNU6-381P-201ENST00000391259 108 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms