Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 snoU13.27-201ENST00000459278 104 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXC11O43248 AC107393.1-201ENST00000512403 346 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 RNU6-1012P-201ENST00000516606 109 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 RPL21P9-201ENST00000556149 474 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 C8orf59P2-201ENST00000603441 271 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 AL080274.1-201ENST00000605565 220 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 AC006157.1-201ENST00000611750 366 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 AC090971.5-201ENST00000621102 293 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 AC091925.1-201ENST00000623204 462 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 AL606534.2-204ENST00000635008 178 ntBASIC1.92□□□□□ -2.1
HOXC11O43248 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
HOXC11O43248 RNU6-961P-201ENST00000363893 105 ntBASIC1.91□□□□□ -2.1
HOXC11O43248 Y_RNA.419-201ENST00000384041 102 ntBASIC1.91□□□□□ -2.1
HOXC11O43248 Y_RNA.496-201ENST00000384444 101 ntBASIC1.91□□□□□ -2.1
HOXC11O43248 Y_RNA.526-201ENST00000384572 110 ntBASIC1.91□□□□□ -2.1
HOXC11O43248 MIR9-3-201ENST00000385084 90 ntBASIC1.91□□□□□ -2.1
HOXC11O43248 MRPL35P1-201ENST00000404272 572 ntBASIC1.91□□□□□ -2.1
HOXC11O43248 SUMO2P12-201ENST00000405924 140 ntBASIC1.91□□□□□ -2.1
HOXC11O43248 AL355796.1-201ENST00000406706 323 ntBASIC1.91□□□□□ -2.1
HOXC11O43248 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.91□□□□□ -2.1
HOXC11O43248 RNU7-94P-201ENST00000459576 63 ntBASIC1.91□□□□□ -2.1
HOXC11O43248 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.91□□□□□ -2.1
HOXC11O43248 AC090574.1-201ENST00000623186 233 ntBASIC1.91□□□□□ -2.1
HOXC11O43248 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
HOXC11O43248 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.9□□□□□ -2.1
HOXC11O43248 RNU1-17P-201ENST00000363022 152 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 Y_RNA.460-201ENST00000384255 102 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 Y_RNA.509-201ENST00000384506 99 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 RNU2-20P-201ENST00000410425 191 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 SDAD1P3-201ENST00000427380 333 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.9□□□□□ -2.11
HOXC11O43248 AC005002.2-201ENST00000438228 269 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 CHEK2P4-201ENST00000450340 246 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 RPS26P45-201ENST00000471748 340 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.9□□□□□ -2.11
HOXC11O43248 AC008834.1-201ENST00000511612 175 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 RNA5SP20-201ENST00000515976 84 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 RNA5SP458-201ENST00000516188 119 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 SNORA40.14-201ENST00000516543 86 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 RNU7-172P-201ENST00000517125 64 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.9□□□□□ -2.11
HOXC11O43248 AP002001.1-203ENST00000534002 267 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 MIR4709-201ENST00000577272 72 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.9□□□□□ -2.11
HOXC11O43248 MIR3683-201ENST00000580847 82 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 AC005176.2-201ENST00000596933 147 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 AC011476.5-201ENST00000615594 130 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 U6.115-201ENST00000636045 103 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 U6.92-201ENST00000636464 89 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 U6.108-201ENST00000637764 58 ntBASIC1.9□□□□□ -2.11
HOXC11O43248 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
HOXC11O43248 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.89□□□□□ -2.11
HOXC11O43248 SNORA27.1-201ENST00000362604 124 ntBASIC1.89□□□□□ -2.11
HOXC11O43248 RNU6-626P-201ENST00000363354 107 ntBASIC1.89□□□□□ -2.11
HOXC11O43248 RNU6-454P-201ENST00000364292 107 ntBASIC1.89□□□□□ -2.11
HOXC11O43248 RNU6-708P-201ENST00000384217 107 ntBASIC1.89□□□□□ -2.11
HOXC11O43248 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
HOXC11O43248 RNA5SP109-201ENST00000391010 116 ntBASIC1.89□□□□□ -2.11
HOXC11O43248 RNU7-34P-201ENST00000459394 64 ntBASIC1.89□□□□□ -2.11
HOXC11O43248 RPL26P26-201ENST00000480251 434 ntBASIC1.89□□□□□ -2.11
HOXC11O43248 AC097462.1-201ENST00000514125 324 ntBASIC1.89□□□□□ -2.11
HOXC11O43248 RNU4-77P-201ENST00000516692 156 ntBASIC1.89□□□□□ -2.11
HOXC11O43248 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXC11O43248 AL050343.2-201ENST00000607338 280 ntBASIC1.89□□□□□ -2.11
HOXC11O43248 AC240442.1-201ENST00000616055 283 ntBASIC1.89□□□□□ -2.11
HOXC11O43248 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HOXC11O43248 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
HOXC11O43248 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.89□□□□□ -2.11
HOXC11O43248 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
HOXC11O43248 AC100821.1-201ENST00000523153 2479 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 MIR369-201ENST00000362155 70 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 Y_RNA.112-201ENST00000363250 102 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 RNU6-20P-201ENST00000384106 107 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 MIR873-201ENST00000401120 77 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 AC018865.2-201ENST00000423631 129 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 JTBP1-201ENST00000441314 247 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 snoU13.9-201ENST00000458927 103 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 RNU6-1278P-201ENST00000516130 107 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.88□□□□□ -2.11
HOXC11O43248 MIR5188-201ENST00000583467 113 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 AC084768.2-201ENST00000622736 221 ntBASIC1.88□□□□□ -2.11
HOXC11O43248 Y_RNA.61-201ENST00000362835 102 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 RNY1P14-201ENST00000384426 108 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 RPL21P1-201ENST00000399532 476 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 MIR934-201ENST00000401241 83 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 AC245047.3-201ENST00000429428 127 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 RPS29P11-201ENST00000496507 171 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 SNORA70.12-201ENST00000516084 153 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 MIR4255-201ENST00000579351 72 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 AC073413.2-201ENST00000604332 360 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 Y_RNA.772-201ENST00000606692 102 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 uc_338.22-201ENST00000622722 187 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 AL160413.1-201ENST00000622780 310 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
HOXC11O43248 AC018630.2-201ENST00000534866 2403 ntBASIC1.87□□□□□ -2.11
HOXC11O43248 MIR424-201ENST00000362227 98 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 RNU1-22P-201ENST00000363334 158 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 Y_RNA.243-201ENST00000364481 109 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms