Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RNU1-98P-201ENST00000458992 160 ntBASIC1.92□□□□□ -2.1
NPHP1O15259 RNU7-34P-201ENST00000459394 64 ntBASIC1.92□□□□□ -2.1
NPHP1O15259 RPS26P55-201ENST00000471178 356 ntBASIC1.92□□□□□ -2.1
NPHP1O15259 AC099513.1-201ENST00000490423 301 ntBASIC1.92□□□□□ -2.1
NPHP1O15259 RNU6-120P-201ENST00000516077 103 ntBASIC1.92□□□□□ -2.1
NPHP1O15259 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.92□□□□□ -2.1
NPHP1O15259 AC015688.6-201ENST00000577737 104 ntBASIC1.92□□□□□ -2.1
NPHP1O15259 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.92□□□□□ -2.1
NPHP1O15259 AL929325.1-201ENST00000603096 117 ntBASIC1.92□□□□□ -2.1
NPHP1O15259 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.92□□□□□ -2.1
NPHP1O15259 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
NPHP1O15259 snoU13.18-201ENST00000459483 104 ntBASIC1.91□□□□□ -2.1
NPHP1O15259 HMGN1P7-201ENST00000491722 313 ntBASIC1.91□□□□□ -2.1
NPHP1O15259 AC010598.1-201ENST00000510378 103 ntBASIC1.91□□□□□ -2.1
NPHP1O15259 SNORA31.10-201ENST00000516482 106 ntBASIC1.91□□□□□ -2.1
NPHP1O15259 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.91□□□□□ -2.1
NPHP1O15259 AC018448.1-201ENST00000552843 316 ntBASIC1.91□□□□□ -2.1
NPHP1O15259 MIR4801-201ENST00000582704 82 ntBASIC1.91□□□□□ -2.1
NPHP1O15259 MIR5690-201ENST00000583739 73 ntBASIC1.91□□□□□ -2.1
NPHP1O15259 MIR4438-201ENST00000585271 93 ntBASIC1.91□□□□□ -2.1
NPHP1O15259 AC113139.1-201ENST00000605049 239 ntBASIC1.91□□□□□ -2.1
NPHP1O15259 MIR410-201ENST00000362222 80 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 Y_RNA.796-201ENST00000364268 102 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 Y_RNA.799-201ENST00000364992 102 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 RNU6-950P-201ENST00000384651 107 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 Y_RNA.577-201ENST00000384794 101 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 AL355796.1-201ENST00000406706 323 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.9□□□□□ -2.11
NPHP1O15259 AL354695.1-201ENST00000427935 228 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 MIR2053-201ENST00000459295 91 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.9□□□□□ -2.11
NPHP1O15259 RNA5SP445-201ENST00000515889 115 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 RNU6-970P-201ENST00000516312 107 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 AC027419.1-201ENST00000522976 328 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 AC023157.2-201ENST00000540596 141 ntBASIC1.9□□□□□ -2.11
NPHP1O15259 AC073544.1-201ENST00000600110 1595 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 RNU6-1301P-201ENST00000362724 104 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 Y_RNA.303-201ENST00000364998 94 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 RNU6-1304P-201ENST00000411374 106 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 AC010154.1-201ENST00000425857 269 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 RPS27P22-201ENST00000478056 241 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 AC023790.1-201ENST00000482174 347 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 AC010469.2-201ENST00000496412 480 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.89□□□□□ -2.11
NPHP1O15259 AC022493.2-201ENST00000506122 481 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.89□□□□□ -2.11
NPHP1O15259 MIR2355-201ENST00000517199 87 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.89□□□□□ -2.11
NPHP1O15259 AL442163.3-201ENST00000554110 156 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
NPHP1O15259 AC080078.3-201ENST00000605407 463 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 MIR6504-201ENST00000613520 61 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 AC087588.2-201ENST00000617667 426 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 AL353770.2-201ENST00000620024 78 ntBASIC1.89□□□□□ -2.11
NPHP1O15259 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
NPHP1O15259 SNORA72.1-201ENST00000363485 129 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 SNORA20B-201ENST00000384220 132 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 RNU6-997P-201ENST00000384725 107 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 MIR1304-201ENST00000408243 91 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 MIR1276-201ENST00000408707 83 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 AC114482.1-201ENST00000418010 247 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 AC245047.3-201ENST00000429428 127 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 AC027119.1-201ENST00000440877 241 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.88□□□□□ -2.11
NPHP1O15259 SNORA40.9-201ENST00000515895 93 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 RNU6-559P-201ENST00000516151 98 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 AP002001.1-203ENST00000534002 267 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 AC005730.3-201ENST00000583067 366 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 AL390123.1-201ENST00000603216 237 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 MIR8054-201ENST00000620877 86 ntBASIC1.88□□□□□ -2.11
NPHP1O15259 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.88□□□□□ -2.11
NPHP1O15259 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
NPHP1O15259 Y_RNA.191-201ENST00000363972 113 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.87□□□□□ -2.11
NPHP1O15259 RNU6-890P-201ENST00000384121 107 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 Y_RNA.498-201ENST00000384460 102 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 RNU6-1031P-201ENST00000384773 107 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 MIR625-201ENST00000385047 85 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.87□□□□□ -2.11
NPHP1O15259 MTCO3P10-201ENST00000455912 772 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 RNU6-625P-201ENST00000459412 107 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.87□□□□□ -2.11
NPHP1O15259 AC079140.2-201ENST00000506193 142 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 Y_RNA.675-201ENST00000516389 149 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 RNU6-264P-201ENST00000517134 104 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.87□□□□□ -2.11
NPHP1O15259 MIR3684-201ENST00000579779 74 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 UBE2V2P2-201ENST00000587677 504 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 AL078603.1-201ENST00000603824 313 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 MIR6078-201ENST00000611069 100 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 AC021506.2-201ENST00000612354 169 ntBASIC1.87□□□□□ -2.11
NPHP1O15259 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
NPHP1O15259 Y_RNA.142-201ENST00000363491 102 ntBASIC1.86□□□□□ -2.11
NPHP1O15259 MIR489-201ENST00000384923 84 ntBASIC1.86□□□□□ -2.11
NPHP1O15259 SNORA69.1-201ENST00000390904 137 ntBASIC1.86□□□□□ -2.11
NPHP1O15259 MRPL42P3-201ENST00000401492 326 ntBASIC1.86□□□□□ -2.11
NPHP1O15259 MTCYBP4-201ENST00000401524 249 ntBASIC1.86□□□□□ -2.11
NPHP1O15259 MRPL35P1-201ENST00000404272 572 ntBASIC1.86□□□□□ -2.11
NPHP1O15259 RNU6-1156P-201ENST00000410365 100 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 149 ms