Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-1175P-201ENST00000365200 107 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 SNORA6-201ENST00000384033 151 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 RNU2-54P-201ENST00000410299 190 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-130P-201ENST00000411112 103 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 AC108059.2-201ENST00000434626 151 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-155P-201ENST00000516347 100 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-1046P-201ENST00000516538 107 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 AC131281.1-201ENST00000522984 164 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 MYL12BP1-201ENST00000569826 507 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 MIR5094-201ENST00000578766 85 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 MIR4287-201ENST00000579398 78 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 AC008749.1-201ENST00000597650 306 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 AC006006.1-201ENST00000603082 144 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 AC011373.1-201ENST00000607270 237 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 AC046143.2-201ENST00000609789 160 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 AC022513.1-201ENST00000624512 117 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 U6.115-201ENST00000636045 103 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 ZNF702P-202ENST00000434269 1966 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 AC008555.8-201ENST00000623602 2168 ntBASIC3.32□□□□□ -1.88
CCDC9Q9Y3X0 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
CCDC9Q9Y3X0 Y_RNA.133-201ENST00000363428 110 ntBASIC3.31□□□□□ -1.88
CCDC9Q9Y3X0 Y_RNA.570-201ENST00000384750 101 ntBASIC3.31□□□□□ -1.88
CCDC9Q9Y3X0 AL359511.1-201ENST00000402970 211 ntBASIC3.31□□□□□ -1.88
CCDC9Q9Y3X0 AL355497.1-201ENST00000406262 551 ntBASIC3.31□□□□□ -1.88
CCDC9Q9Y3X0 MTND5P22-201ENST00000458380 195 ntBASIC3.31□□□□□ -1.88
CCDC9Q9Y3X0 RNU7-110P-201ENST00000516891 62 ntBASIC3.31□□□□□ -1.88
CCDC9Q9Y3X0 RNU2-12P-201ENST00000517216 168 ntBASIC3.31□□□□□ -1.88
CCDC9Q9Y3X0 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC9Q9Y3X0 MIR6733-201ENST00000635723 61 ntBASIC3.31□□□□□ -1.88
CCDC9Q9Y3X0 RNA5SP276-201ENST00000362580 94 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 Y_RNA.101-201ENST00000363154 102 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-271P-201ENST00000363858 105 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 Y_RNA.183-201ENST00000363882 113 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 Y_RNA.226-201ENST00000364337 114 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 SNORA20B-201ENST00000384220 132 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-196P-201ENST00000384315 107 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-937P-201ENST00000384325 106 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-1105P-201ENST00000384774 107 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 RNA5SP323-201ENST00000391094 133 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 AL117342.1-201ENST00000404861 406 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 AC096920.1-201ENST00000423991 241 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 RPS27P22-201ENST00000478056 241 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 RNVU1-2-201ENST00000516326 135 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-897P-201ENST00000517135 105 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 MIR4423-201ENST00000580922 80 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.3□□□□□ -1.88
CCDC9Q9Y3X0 Y_RNA.210-201ENST00000364161 110 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 Y_RNA.287-201ENST00000364853 94 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 Y_RNA.446-201ENST00000384178 104 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 SNORD63-201ENST00000384262 68 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-21P-201ENST00000384710 107 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 MIR181B1-201ENST00000385240 110 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-907P-201ENST00000390924 102 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 RPL23AP36-201ENST00000413895 458 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 AL358176.2-201ENST00000425769 204 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 AC099677.2-201ENST00000436385 175 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 AC005042.3-201ENST00000453230 174 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 RPL23AP42-201ENST00000471152 471 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 Y_RNA.720-201ENST00000517166 92 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 HMSD-204ENST00000526932 162 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 AC022441.3-201ENST00000605737 136 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 MIR6895-201ENST00000613497 78 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 MIR376A1-201ENST00000616574 68 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 GS1-279B7.1-204ENST00000641809 378 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 MTND5P6-201ENST00000422338 1798 ntBASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC9Q9Y3X0 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-324P-201ENST00000363957 106 ntBASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 Y_RNA.243-201ENST00000364481 109 ntBASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-407P-201ENST00000365280 104 ntBASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 Y_RNA.401-201ENST00000383965 117 ntBASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 AL512604.1-201ENST00000404812 257 ntBASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 RNU2-20P-201ENST00000410425 191 ntBASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 AC113618.1-201ENST00000416747 285 ntBASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 AC073910.1-201ENST00000445047 438 ntBASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 AL359075.3-201ENST00000613288 217 ntBASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 CENPCP1-201ENST00000533085 2578 ntBASIC3.28□□□□□ -1.88
CCDC9Q9Y3X0 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CCDC9Q9Y3X0 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC9Q9Y3X0 RNU6-1309P-201ENST00000363305 108 ntBASIC3.27□□□□□ -1.89
CCDC9Q9Y3X0 Y_RNA.331-201ENST00000365267 102 ntBASIC3.27□□□□□ -1.89
CCDC9Q9Y3X0 RNU6-574P-201ENST00000384265 107 ntBASIC3.27□□□□□ -1.89
CCDC9Q9Y3X0 AL355796.1-201ENST00000406706 323 ntBASIC3.27□□□□□ -1.89
CCDC9Q9Y3X0 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC9Q9Y3X0 RNA5SP57-201ENST00000459463 123 ntBASIC3.27□□□□□ -1.89
CCDC9Q9Y3X0 SNORA70.12-201ENST00000516084 153 ntBASIC3.27□□□□□ -1.89
CCDC9Q9Y3X0 SNORA9.3-201ENST00000516383 129 ntBASIC3.27□□□□□ -1.89
CCDC9Q9Y3X0 MIR4438-201ENST00000585271 93 ntBASIC3.27□□□□□ -1.89
CCDC9Q9Y3X0 AL356292.1-201ENST00000283110 373 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms