Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU6-341P-201ENST00000516973 96 ntBASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 RNU6-1231P-201ENST00000517185 103 ntBASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 AC242852.1-201ENST00000612151 96 ntBASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 AC244015.1-201ENST00000622301 99 ntBASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 SCARNA15.3-201ENST00000626315 122 ntBASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 SCARNA4.1-201ENST00000628597 123 ntBASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 LINC02471-203ENST00000641941 4752 ntBASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 MTND5P18-201ENST00000445624 1801 ntBASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 AP001486.2-201ENST00000561652 5113 ntBASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 AL136360.1-201ENST00000503377 1900 ntBASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 Y_RNA.253-201ENST00000364562 112 ntBASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 RNA5SP164-201ENST00000516533 110 ntBASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 Y_RNA.694-201ENST00000516677 117 ntBASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LIMD1Q9UGP4 AC008555.8-201ENST00000623602 2168 ntBASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 ATP5A1P2-201ENST00000412323 255 ntBASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 RN7SL807P-201ENST00000470923 297 ntBASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 AC008507.4-201ENST00000585464 127 ntBASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 AL355297.2-201ENST00000604792 129 ntBASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 AL353149.1-201ENST00000610667 244 ntBASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 MIR8058-201ENST00000615737 89 ntBASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.93□□□□□ -1.78
LIMD1Q9UGP4 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 RNU6-508P-201ENST00000363231 103 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 SNORA1-201ENST00000384107 130 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 MIR515-2-201ENST00000384883 83 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 MIR515-1-201ENST00000384884 83 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 MIR128-1-201ENST00000384921 82 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 MIR548A1-201ENST00000385041 97 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 RNA5SP89-201ENST00000410300 108 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 RNA5SP136-201ENST00000410906 107 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 AL031737.1-201ENST00000450125 223 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 RNU7-94P-201ENST00000459576 63 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 RN7SL601P-201ENST00000471221 293 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 RNA5SP236-201ENST00000516169 116 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 SNORA70.14-201ENST00000516205 110 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 RNU1-142P-201ENST00000516682 145 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 MIR6079-201ENST00000635807 62 ntBASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.92□□□□□ -1.78
LIMD1Q9UGP4 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 MIR340-201ENST00000362125 95 ntBASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 SNORD61-201ENST00000384252 73 ntBASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 RNU2-48P-201ENST00000410694 191 ntBASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 AC083863.1-201ENST00000438811 231 ntBASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 AC115115.1-201ENST00000449927 248 ntBASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 AL049873.1-201ENST00000480540 376 ntBASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 AC096725.1-201ENST00000514266 313 ntBASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 RN7SKP282-201ENST00000516824 299 ntBASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
LIMD1Q9UGP4 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.9□□□□□ -1.78
LIMD1Q9UGP4 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
LIMD1Q9UGP4 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
LIMD1Q9UGP4 RNU6-32P-201ENST00000383948 107 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 RNU6-13P-201ENST00000384248 107 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 RNU6-12P-201ENST00000384604 107 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 RNU6-41P-201ENST00000384741 107 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 AC007064.1-201ENST00000412238 351 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 SRIP3-201ENST00000413200 219 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 SNRPGP13-201ENST00000442212 177 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 SNORD105B-201ENST00000458770 79 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 RPS29P12-201ENST00000460178 152 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 RPL31P61-201ENST00000496160 376 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 SNORA72.7-201ENST00000516349 94 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 RNU6-1291P-201ENST00000516591 104 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 RNU7-128P-201ENST00000517247 62 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 AL360157.1-201ENST00000565962 87 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms