Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.36□□□□□ -2.19
LHX3Q9UBR4 AC090617.3-201ENST00000573670 475 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 snoU13.31-201ENST00000607291 104 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 MIR1244-1-201ENST00000612829 85 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
LHX3Q9UBR4 AC092794.2-201ENST00000620933 563 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 MIR1244-3-201ENST00000635744 85 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 MIR1244-2-201ENST00000636449 85 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 AL669831.3-213ENST00000636676 183 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 MIR1244-4-202ENST00000636813 85 ntBASIC1.36□□□□□ -2.19
LHX3Q9UBR4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.35□□□□□ -2.19
LHX3Q9UBR4 MIR302D-201ENST00000362275 68 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 RNA5SP361-201ENST00000362686 118 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 Y_RNA.166-201ENST00000363730 102 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 RNU6-879P-201ENST00000364328 108 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 Y_RNA.338-201ENST00000365320 114 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 Y_RNA.358-201ENST00000365491 99 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 MIR194-1-201ENST00000384892 85 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 RPL21P1-201ENST00000399532 476 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.35□□□□□ -2.19
LHX3Q9UBR4 RNU7-34P-201ENST00000459394 64 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 RPS26P45-201ENST00000471748 340 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 AC116353.2-201ENST00000505332 712 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 AC108729.3-201ENST00000513484 108 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 RNU6-120P-201ENST00000516077 103 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 Y_RNA.691-201ENST00000516611 103 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 APOOP3-201ENST00000536787 586 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 SUB1P3-201ENST00000564581 315 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 AC004584.2-201ENST00000570407 410 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 AC005899.2-201ENST00000584353 90 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 AC022306.2-201ENST00000617563 647 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 U6.73-201ENST00000619194 103 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 U6.108-201ENST00000637764 58 ntBASIC1.35□□□□□ -2.19
LHX3Q9UBR4 RNU6-99P-201ENST00000364721 107 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 MIR329-1-201ENST00000385028 80 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.34□□□□□ -2.19
LHX3Q9UBR4 RNU6-370P-201ENST00000411008 104 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 AC004965.1-201ENST00000413033 213 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 AL606517.2-201ENST00000442855 241 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 Y_RNA.635-201ENST00000459041 101 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.34□□□□□ -2.19
LHX3Q9UBR4 RNU6-902P-201ENST00000517212 91 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 AC022868.1-201ENST00000517767 391 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 CYCSP23-201ENST00000519781 313 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 MIR3660-201ENST00000584845 100 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 AP001485.1-201ENST00000604799 199 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 AL357075.2-201ENST00000614906 189 ntBASIC1.34□□□□□ -2.19
LHX3Q9UBR4 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.34□□□□□ -2.19
LHX3Q9UBR4 Y_RNA.390-201ENST00000383932 102 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 MRPL35P1-201ENST00000404272 572 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 TOMM22P2-201ENST00000430735 237 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 RBMX2P4-201ENST00000441256 376 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 UQCRBP2-201ENST00000447827 297 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 RPS27P1-201ENST00000450552 247 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 RNU1-98P-201ENST00000458992 160 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 SNORD65B-201ENST00000459126 73 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 RPL17P19-201ENST00000489069 552 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 Y_RNA.676-201ENST00000516393 96 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.33□□□□□ -2.2
LHX3Q9UBR4 AC068338.1-201ENST00000565567 176 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 MIR4498-201ENST00000577599 66 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 AC015688.6-201ENST00000577737 104 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 AL121890.5-201ENST00000620848 304 ntBASIC1.33□□□□□ -2.2
LHX3Q9UBR4 MIR758-201ENST00000390227 88 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 Y_RNA.646-201ENST00000410980 101 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 AC138393.2-201ENST00000414742 246 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 AC010154.1-201ENST00000425857 269 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 AC098614.3-201ENST00000438957 440 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 AC027119.1-201ENST00000440877 241 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 UBE2V1P7-201ENST00000446395 340 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.32□□□□□ -2.2
LHX3Q9UBR4 PRDX4P1-201ENST00000507189 574 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 RNU7-99P-201ENST00000516271 62 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 RNU6-307P-201ENST00000516743 106 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 SNORA20.3-201ENST00000516880 132 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 AC023157.2-201ENST00000540596 141 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 AL442163.3-201ENST00000554110 156 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 MIR3937-201ENST00000580135 106 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 AL929325.1-201ENST00000603096 117 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 AC006435.5-201ENST00000624486 112 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.32□□□□□ -2.2
LHX3Q9UBR4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 AC099654.14-201ENST00000638599 341 ntBASIC1.32□□□□□ -2.2
LHX3Q9UBR4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.32□□□□□ -2.2
LHX3Q9UBR4 RNU6-1145P-201ENST00000384246 107 ntBASIC1.31□□□□□ -2.2
LHX3Q9UBR4 SNORA40.6-201ENST00000391153 128 ntBASIC1.31□□□□□ -2.2
LHX3Q9UBR4 RN7SKP200-201ENST00000410564 320 ntBASIC1.31□□□□□ -2.2
LHX3Q9UBR4 ELOCP21-201ENST00000412558 336 ntBASIC1.31□□□□□ -2.2
LHX3Q9UBR4 RPL23AP36-201ENST00000413895 458 ntBASIC1.31□□□□□ -2.2
LHX3Q9UBR4 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.31□□□□□ -2.2
LHX3Q9UBR4 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.31□□□□□ -2.2
LHX3Q9UBR4 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.31□□□□□ -2.2
LHX3Q9UBR4 AC010598.1-201ENST00000510378 103 ntBASIC1.31□□□□□ -2.2
LHX3Q9UBR4 AC019176.1-201ENST00000518519 225 ntBASIC1.31□□□□□ -2.2
LHX3Q9UBR4 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.31□□□□□ -2.2
LHX3Q9UBR4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.31□□□□□ -2.2
LHX3Q9UBR4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms