Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 HMGN1P10-201ENST00000474557 553 ntBASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 Y_RNA.715-201ENST00000517082 110 ntBASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 SNORA31.25-201ENST00000517242 134 ntBASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 AP002001.1-203ENST00000534002 267 ntBASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 AC055872.1-201ENST00000570978 278 ntBASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 MIR5006-201ENST00000583027 110 ntBASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 AC124312.5-201ENST00000604451 268 ntBASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 AL645939.4-201ENST00000604495 135 ntBASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 AC010999.1-201ENST00000611856 324 ntBASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 AC008121.3-201ENST00000618726 433 ntBASIC1.85□□□□□ -2.11
UPF3AQ9H1J1 MTND5P35-201ENST00000557537 1720 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 MIR340-201ENST00000362125 95 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 Y_RNA.26-201ENST00000362539 101 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 RNU1-62P-201ENST00000362599 164 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 RNU6-545P-201ENST00000362681 104 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 Y_RNA.105-201ENST00000363182 111 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 RNU6-961P-201ENST00000363893 105 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 RNU6-280P-201ENST00000364145 104 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 SNORD87-201ENST00000364849 89 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 RNU6-926P-201ENST00000384075 107 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 RNU6-793P-201ENST00000384233 104 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 SNORD12B-201ENST00000410433 91 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 RNU2-63P-201ENST00000410792 194 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AC007395.1-201ENST00000451333 677 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 CYP2C59P-201ENST00000457790 269 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 MTATP8P1-201ENST00000467115 207 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 RNU6-344P-201ENST00000516635 111 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 Y_RNA.720-201ENST00000517166 92 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AC034114.1-201ENST00000520293 285 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AC022616.4-201ENST00000522985 181 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AC023442.1-201ENST00000531247 422 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AC233702.2-202ENST00000562547 291 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 MIR3122-201ENST00000577243 73 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AC024614.2-201ENST00000577584 372 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AC008737.2-201ENST00000599446 118 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 SNRPGP20-201ENST00000604477 205 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AC240442.1-201ENST00000616055 283 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 AL138825.1-201ENST00000618587 192 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.84□□□□□ -2.11
UPF3AQ9H1J1 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
UPF3AQ9H1J1 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.145-201ENST00000363527 102 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.179-201ENST00000363844 90 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 RNA5SP240-201ENST00000365355 128 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 AL512604.1-201ENST00000404812 257 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 MIR1252-201ENST00000408861 65 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 MTCO3P19-201ENST00000415864 321 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 HMGN2P18-201ENST00000450680 270 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 AC067942.3-201ENST00000512025 362 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 SNORA40.9-201ENST00000515895 93 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 RNU6-667P-201ENST00000517186 102 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 AC087441.2-201ENST00000529141 262 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 MIR4659A-201ENST00000580269 81 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 AC136443.5-201ENST00000603741 370 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 AC005034.5-201ENST00000604219 466 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 AC022202.1-201ENST00000613515 211 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
UPF3AQ9H1J1 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 RNU6-743P-201ENST00000364151 106 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.214-201ENST00000364201 112 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 RNU6-60P-201ENST00000364792 103 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 RNU6-806P-201ENST00000365147 105 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.424-201ENST00000384063 103 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.471-201ENST00000384312 102 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 RNU1-148P-201ENST00000384472 162 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 RNU6-101P-201ENST00000410323 104 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 ELOCP20-201ENST00000422460 345 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 AL358176.2-201ENST00000425769 204 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 SDAD1P3-201ENST00000427380 333 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 FCF1P4-201ENST00000448326 183 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 RNU7-14P-201ENST00000459331 62 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 HMGN2P9-201ENST00000476875 229 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 RPS23P5-201ENST00000495419 428 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 RNU6-966P-201ENST00000516479 104 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.683-201ENST00000516508 93 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 RNU5F-4P-201ENST00000516581 114 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 AC136932.1-201ENST00000574771 208 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 MIR3126-201ENST00000577443 74 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 MIR3618-201ENST00000580330 88 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 AC012493.3-201ENST00000604494 112 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 AC010205.1-201ENST00000616668 449 ntBASIC1.82□□□□□ -2.12
UPF3AQ9H1J1 AC008873.1-201ENST00000625051 138 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms