Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 MIR5696-201ENST00000578474 85 ntBASIC1.09□□□□□ -2.23
RPAP1Q9BWH6 AL020996.3-201ENST00000606617 222 ntBASIC1.09□□□□□ -2.23
RPAP1Q9BWH6 AL355802.3-201ENST00000607571 545 ntBASIC1.09□□□□□ -2.23
RPAP1Q9BWH6 U6.73-201ENST00000619194 103 ntBASIC1.09□□□□□ -2.23
RPAP1Q9BWH6 MIR8054-201ENST00000620877 86 ntBASIC1.09□□□□□ -2.23
RPAP1Q9BWH6 AC024614.3-201ENST00000637860 256 ntBASIC1.09□□□□□ -2.23
RPAP1Q9BWH6 Y_RNA.41-201ENST00000362646 102 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.100-201ENST00000363141 102 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 RNU6-280P-201ENST00000364145 104 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.414-201ENST00000384011 101 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.415-201ENST00000384012 112 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.517-201ENST00000384551 106 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 RNU6-440P-201ENST00000390882 105 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 RNU6-159P-201ENST00000391080 106 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AL356776.1-201ENST00000406574 447 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 RNU6-1132P-201ENST00000459214 107 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 RN7SKP88-201ENST00000516847 250 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 UBL5P4-201ENST00000562584 236 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 7SK.7-201ENST00000603504 247 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 7SK.8-201ENST00000612110 250 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 7SK.11-201ENST00000615477 250 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 7SK.13-201ENST00000622040 250 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 RNU6-1090P-201ENST00000364065 94 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.374-201ENST00000365606 101 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 PGBD4P5-201ENST00000445958 426 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AC091179.3-201ENST00000474761 144 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AL133373.1-201ENST00000497098 94 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 RNU7-99P-201ENST00000516271 62 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 RNU7-128P-201ENST00000517247 62 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AC004584.2-201ENST00000570407 410 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AC022432.1-201ENST00000595739 310 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AL390123.1-201ENST00000603216 237 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 AC099654.5-201ENST00000636479 350 ntBASIC1.08□□□□□ -2.24
RPAP1Q9BWH6 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 RNU6-793P-201ENST00000384233 104 ntBASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 MRPL42P3-201ENST00000401492 326 ntBASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 AC004941.2-201ENST00000427009 228 ntBASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 AC245047.3-201ENST00000429428 127 ntBASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 AC005534.2-201ENST00000431047 433 ntBASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 MTATP6P13-201ENST00000438531 667 ntBASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 MTND2P22-201ENST00000444325 1033 ntBASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 MIR4273-201ENST00000582824 84 ntBASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 FAM71BP1-201ENST00000604431 523 ntBASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 AC048344.4-201ENST00000619744 527 ntBASIC1.07□□□□□ -2.24
RPAP1Q9BWH6 RNU6-1266P-201ENST00000362794 105 ntBASIC1.06□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.179-201ENST00000363844 90 ntBASIC1.06□□□□□ -2.24
RPAP1Q9BWH6 RNU4-75P-201ENST00000364621 146 ntBASIC1.06□□□□□ -2.24
RPAP1Q9BWH6 MIR625-201ENST00000385047 85 ntBASIC1.06□□□□□ -2.24
RPAP1Q9BWH6 RPL37P10-201ENST00000412884 288 ntBASIC1.06□□□□□ -2.24
RPAP1Q9BWH6 MTND3P21-201ENST00000433774 331 ntBASIC1.06□□□□□ -2.24
RPAP1Q9BWH6 MTCO2P7-201ENST00000446518 666 ntBASIC1.06□□□□□ -2.24
RPAP1Q9BWH6 AC093534.1-201ENST00000504977 132 ntBASIC1.06□□□□□ -2.24
RPAP1Q9BWH6 RNU7-175P-201ENST00000515915 61 ntBASIC1.06□□□□□ -2.24
RPAP1Q9BWH6 RNU5F-3P-201ENST00000363767 117 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 AC243428.1-201ENST00000421099 264 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 DLGAP5P1-201ENST00000430307 464 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 Z83846.1-201ENST00000446798 265 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 MTND4P18-201ENST00000447010 465 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 SNORD65B-201ENST00000459126 73 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 RPL39P38-201ENST00000467018 153 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 MIR4698-201ENST00000577795 80 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 MIR3942-201ENST00000585264 109 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 AL021879.1-201ENST00000611756 288 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 AC008133.2-201ENST00000624540 351 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 AC068647.2-201ENST00000637380 353 ntBASIC1.05□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.402-201ENST00000383972 102 ntBASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.533-201ENST00000384596 114 ntBASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 RNU6-306P-201ENST00000384617 107 ntBASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 MIR10B-201ENST00000385011 110 ntBASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 RNU6-373P-201ENST00000411247 98 ntBASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 POLR2J4-204ENST00000418424 324 ntBASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 AC093303.1-201ENST00000514549 295 ntBASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 RNA5SP404-201ENST00000517118 132 ntBASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 AC134698.4-201ENST00000523451 826 ntBASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 AC109635.3-201ENST00000529536 185 ntBASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 AC090617.10-201ENST00000624308 134 ntBASIC1.04□□□□□ -2.24
RPAP1Q9BWH6 RNU6-596P-201ENST00000365395 98 ntBASIC1.03□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.405-201ENST00000383979 100 ntBASIC1.03□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.451-201ENST00000384200 100 ntBASIC1.03□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.524-201ENST00000384564 100 ntBASIC1.03□□□□□ -2.24
RPAP1Q9BWH6 Y_RNA.561-201ENST00000384694 100 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 142.5 ms