Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 U6.92-201ENST00000636464 89 ntBASIC1.6□□□□□ -2.15
CCDC28BQ9BUN5 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
CCDC28BQ9BUN5 AL159152.1-201ENST00000635019 2587 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 SNORA63.7-201ENST00000365579 123 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 Y_RNA.424-201ENST00000384063 103 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 SNORA8-201ENST00000384574 139 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 RNU6-1011P-201ENST00000384668 107 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 RN7SKP51-201ENST00000410781 304 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 RAB28P5-201ENST00000427490 651 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 UBE2DNL-203ENST00000474922 222 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 RPL26P26-201ENST00000480251 434 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 RNU6-1146P-201ENST00000516282 102 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 RNU6-107P-201ENST00000516643 102 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 AC025647.1-201ENST00000517879 253 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 SUMO2P18-201ENST00000518873 252 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 MIR4659A-201ENST00000580269 81 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 AL390123.1-201ENST00000603216 237 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 AC064859.1-201ENST00000624741 174 ntBASIC1.59□□□□□ -2.15
CCDC28BQ9BUN5 AP000648.3-201ENST00000623539 4507 ntBASIC1.59□□□□□ -2.16
CCDC28BQ9BUN5 ZNF72P-201ENST00000425869 1908 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 AC091812.1-201ENST00000432235 1948 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.158-201ENST00000363651 101 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.230-201ENST00000364348 109 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-708P-201ENST00000384217 107 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.485-201ENST00000384395 102 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 RNA5SP475-201ENST00000410568 110 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 HMGN2P3-201ENST00000433603 273 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 HMGN2P5-201ENST00000436882 273 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 ATP5J2P3-201ENST00000451550 258 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 AC010469.2-201ENST00000496412 480 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 AC008834.1-201ENST00000511612 175 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-408P-201ENST00000515910 100 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-1153P-201ENST00000516760 105 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 AC040926.1-201ENST00000530195 238 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 MIR4513-201ENST00000581077 86 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 AC240442.1-201ENST00000616055 283 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 U1.36-201ENST00000620684 176 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 MIR3674-201ENST00000636576 68 ntBASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC28BQ9BUN5 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-1266P-201ENST00000362794 105 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-1240P-201ENST00000365155 104 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.422-201ENST00000384054 114 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.551-201ENST00000384661 102 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.645-201ENST00000391229 102 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 MIR934-201ENST00000401241 83 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 RN7SKP101-201ENST00000411376 320 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 AC060773.1-201ENST00000421698 310 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 SUMO1P2-201ENST00000452524 304 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 U8.20-201ENST00000459445 131 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 AC011406.1-201ENST00000512440 370 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.772-201ENST00000606692 102 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 AC006435.5-201ENST00000624486 112 ntBASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CCDC28BQ9BUN5 SNORA33.2-201ENST00000365413 134 ntBASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-926P-201ENST00000384075 107 ntBASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.458-201ENST00000384240 102 ntBASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 SNORA48.1-201ENST00000390879 135 ntBASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 RN7SKP192-201ENST00000411291 327 ntBASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 MIR4435-1-201ENST00000582552 80 ntBASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 AC016925.2-201ENST00000605108 242 ntBASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 MIR7974-201ENST00000615835 79 ntBASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 AC084768.2-201ENST00000622736 221 ntBASIC1.56□□□□□ -2.16
CCDC28BQ9BUN5 snoU2-30.2-201ENST00000362805 70 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 SNORA63-201ENST00000363450 132 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-961P-201ENST00000363893 105 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.216-201ENST00000364205 93 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.380-201ENST00000365663 111 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.462-201ENST00000384268 102 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 MIR515-2-201ENST00000384883 83 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 MIR515-1-201ENST00000384884 83 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 MIR597-201ENST00000384968 97 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 MIR320A-201ENST00000385302 82 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-823P-201ENST00000391042 103 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-101P-201ENST00000410323 104 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 AC016909.1-201ENST00000415916 166 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 AL390729.2-201ENST00000416137 156 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 RPEP5-201ENST00000441137 268 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 AP005660.1-201ENST00000522972 293 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 AC022254.1-201ENST00000567857 235 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 AC022432.1-201ENST00000595739 310 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 AC104695.3-201ENST00000604052 296 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 AC124312.5-201ENST00000604451 268 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 323.7 ms