Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 MIR570-201ENST00000384917 97 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 MIR624-201ENST00000385217 97 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.89□□□□□ -1.79
TRERF1Q96PN7 RPS3P1-201ENST00000456781 192 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 AC010401.1-201ENST00000463867 348 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 AC010531.2-201ENST00000465012 153 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 RNU1-104P-201ENST00000517280 175 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 AC007751.1-201ENST00000529260 376 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 AC105245.1-201ENST00000581934 244 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 uc_338.4-201ENST00000616635 176 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 MIR8057-201ENST00000620957 69 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.89□□□□□ -1.79
TRERF1Q96PN7 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
TRERF1Q96PN7 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
TRERF1Q96PN7 AL159152.1-201ENST00000635019 2587 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 AC007496.3-201ENST00000624987 3443 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 AC058791.1-201ENST00000608412 3198 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
TRERF1Q96PN7 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
TRERF1Q96PN7 SNORA51.4-201ENST00000364993 124 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 SNORA48.2-201ENST00000390926 124 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 RNA5SP511-201ENST00000410487 115 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 RNA5SP127-201ENST00000411051 133 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 Z92545.1-201ENST00000411782 234 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 SNORD65B-201ENST00000459126 73 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 AC080013.2-201ENST00000460866 323 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 ATP5EP1-201ENST00000510257 156 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 RNA5SP236-201ENST00000516169 116 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 RNU6-970P-201ENST00000516312 107 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 RNA5SP281-201ENST00000516504 135 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 RNU6-365P-201ENST00000517113 106 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 RPL23AP91-201ENST00000569211 455 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 MIR5680-201ENST00000577577 84 ntBASIC3.88□□□□□ -1.79
TRERF1Q96PN7 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.88□□□□□ -1.79
TRERF1Q96PN7 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.88□□□□□ -1.79
TRERF1Q96PN7 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
TRERF1Q96PN7 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.88□□□□□ -1.79
TRERF1Q96PN7 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
TRERF1Q96PN7 SNORA63.5-201ENST00000363548 123 ntBASIC3.87□□□□□ -1.79
TRERF1Q96PN7 MIR29B2-201ENST00000385055 81 ntBASIC3.87□□□□□ -1.79
TRERF1Q96PN7 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
TRERF1Q96PN7 AF228730.3-201ENST00000436691 102 ntBASIC3.87□□□□□ -1.79
TRERF1Q96PN7 AC006539.3-201ENST00000454258 129 ntBASIC3.87□□□□□ -1.79
TRERF1Q96PN7 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.87□□□□□ -1.79
TRERF1Q96PN7 Y_RNA.685-201ENST00000516532 108 ntBASIC3.87□□□□□ -1.79
TRERF1Q96PN7 AC012493.2-201ENST00000595083 291 ntBASIC3.87□□□□□ -1.79
TRERF1Q96PN7 MIR6076-201ENST00000617521 113 ntBASIC3.87□□□□□ -1.79
TRERF1Q96PN7 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
TRERF1Q96PN7 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
TRERF1Q96PN7 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
TRERF1Q96PN7 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
TRERF1Q96PN7 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
TRERF1Q96PN7 MIR590-201ENST00000385008 97 ntBASIC3.86□□□□□ -1.79
TRERF1Q96PN7 SNORA19.1-201ENST00000410656 129 ntBASIC3.86□□□□□ -1.79
TRERF1Q96PN7 AL353705.1-201ENST00000433468 480 ntBASIC3.86□□□□□ -1.79
TRERF1Q96PN7 AL357552.1-201ENST00000445254 415 ntBASIC3.86□□□□□ -1.79
TRERF1Q96PN7 SNORD11-201ENST00000459124 84 ntBASIC3.86□□□□□ -1.79
TRERF1Q96PN7 RPS27P29-201ENST00000463110 252 ntBASIC3.86□□□□□ -1.79
TRERF1Q96PN7 AC083906.5-201ENST00000503722 328 ntBASIC3.86□□□□□ -1.79
TRERF1Q96PN7 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.86□□□□□ -1.79
TRERF1Q96PN7 AC015720.1-201ENST00000565251 277 ntBASIC3.86□□□□□ -1.79
TRERF1Q96PN7 AC022149.2-201ENST00000621061 203 ntBASIC3.86□□□□□ -1.79
TRERF1Q96PN7 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.86□□□□□ -1.79
TRERF1Q96PN7 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
TRERF1Q96PN7 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.86□□□□□ -1.79
TRERF1Q96PN7 PWAR6-201ENST00000552334 4618 ntBASIC3.85□□□□□ -1.79
TRERF1Q96PN7 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.85□□□□□ -1.79
TRERF1Q96PN7 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.85□□□□□ -1.79
TRERF1Q96PN7 Y_RNA.323-201ENST00000365157 109 ntBASIC3.85□□□□□ -1.79
TRERF1Q96PN7 AP002884.2-201ENST00000471647 395 ntBASIC3.85□□□□□ -1.79
TRERF1Q96PN7 AC021205.2-201ENST00000480069 347 ntBASIC3.85□□□□□ -1.79
TRERF1Q96PN7 RN7SL504P-201ENST00000494496 287 ntBASIC3.85□□□□□ -1.79
TRERF1Q96PN7 RNA5SP20-201ENST00000515976 84 ntBASIC3.85□□□□□ -1.79
TRERF1Q96PN7 RNU6-1098P-201ENST00000516772 96 ntBASIC3.85□□□□□ -1.79
TRERF1Q96PN7 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.85□□□□□ -1.79
TRERF1Q96PN7 RNU6-94P-201ENST00000607728 107 ntBASIC3.85□□□□□ -1.79
TRERF1Q96PN7 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
TRERF1Q96PN7 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
TRERF1Q96PN7 Y_RNA.486-201ENST00000384398 107 ntBASIC3.84□□□□□ -1.79
TRERF1Q96PN7 RNU6-748P-201ENST00000384648 107 ntBASIC3.84□□□□□ -1.79
TRERF1Q96PN7 Y_RNA.544-201ENST00000384650 113 ntBASIC3.84□□□□□ -1.79
TRERF1Q96PN7 MIR128-1-201ENST00000384921 82 ntBASIC3.84□□□□□ -1.79
TRERF1Q96PN7 MTATP6P21-201ENST00000440681 189 ntBASIC3.84□□□□□ -1.79
TRERF1Q96PN7 RNU6ATAC17P-201ENST00000516074 71 ntBASIC3.84□□□□□ -1.79
TRERF1Q96PN7 SNORA70.19-201ENST00000516717 90 ntBASIC3.84□□□□□ -1.79
TRERF1Q96PN7 AL365205.2-201ENST00000594586 68 ntBASIC3.84□□□□□ -1.79
TRERF1Q96PN7 AC015726.2-201ENST00000620112 122 ntBASIC3.84□□□□□ -1.79
TRERF1Q96PN7 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.84□□□□□ -1.79
TRERF1Q96PN7 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
TRERF1Q96PN7 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.84□□□□□ -1.79
TRERF1Q96PN7 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
TRERF1Q96PN7 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
TRERF1Q96PN7 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
TRERF1Q96PN7 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.83□□□□□ -1.8
TRERF1Q96PN7 Y_RNA.66-201ENST00000362862 102 ntBASIC3.83□□□□□ -1.8
TRERF1Q96PN7 RNU6-1210P-201ENST00000363775 107 ntBASIC3.83□□□□□ -1.8
TRERF1Q96PN7 RNU6-271P-201ENST00000363858 105 ntBASIC3.83□□□□□ -1.8
TRERF1Q96PN7 Y_RNA.203-201ENST00000364106 102 ntBASIC3.83□□□□□ -1.8
TRERF1Q96PN7 SNORA1-201ENST00000384107 130 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms