Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.34□□□□□ -2.19
VPS39Q96JC1 PISRT1.1-201ENST00000616930 107 ntBASIC1.34□□□□□ -2.19
VPS39Q96JC1 ZNF209P-201ENST00000593450 2304 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 U3.8-201ENST00000363675 217 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 RNY3P11-201ENST00000364153 102 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 Y_RNA.303-201ENST00000364998 94 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 SNORA72.2-201ENST00000365028 127 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 RNU6-1240P-201ENST00000365155 104 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 Y_RNA.490-201ENST00000384413 102 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 RNU6-310P-201ENST00000384655 107 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
VPS39Q96JC1 AC004965.1-201ENST00000413033 213 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.33□□□□□ -2.2
VPS39Q96JC1 SNX2P2-201ENST00000424553 323 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 MTND4P18-201ENST00000447010 465 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.33□□□□□ -2.2
VPS39Q96JC1 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.33□□□□□ -2.2
VPS39Q96JC1 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.33□□□□□ -2.2
VPS39Q96JC1 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.33□□□□□ -2.2
VPS39Q96JC1 AL512598.1-201ENST00000610158 273 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 AL355073.2-201ENST00000612106 557 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 AC092794.2-201ENST00000620933 563 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 AC099654.5-201ENST00000636479 350 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 AC099654.14-201ENST00000638599 341 ntBASIC1.33□□□□□ -2.2
VPS39Q96JC1 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.33□□□□□ -2.2
VPS39Q96JC1 Y_RNA.166-201ENST00000363730 102 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 RNU6-879P-201ENST00000364328 108 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 Y_RNA.364-201ENST00000365532 101 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 RNU6-318P-201ENST00000384283 103 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 RNU6-700P-201ENST00000391043 107 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 SNORA17.3-201ENST00000391159 129 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 RNU6-1186P-201ENST00000410429 97 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 ELOCP21-201ENST00000412558 336 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.32□□□□□ -2.2
VPS39Q96JC1 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.32□□□□□ -2.2
VPS39Q96JC1 AC010154.1-201ENST00000425857 269 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.32□□□□□ -2.2
VPS39Q96JC1 MTCO3P10-201ENST00000455912 772 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 RPS29P29-201ENST00000456396 171 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 AC116353.2-201ENST00000505332 712 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.32□□□□□ -2.2
VPS39Q96JC1 Y_RNA.683-201ENST00000516508 93 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 RNU1-92P-201ENST00000517017 135 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 RNU7-128P-201ENST00000517247 62 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 AC022868.1-201ENST00000517767 391 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 AP002001.1-203ENST00000534002 267 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 AL161670.1-201ENST00000554348 137 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 AL121579.1-201ENST00000555129 305 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 CYP3A52P-201ENST00000563326 91 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 MIR4709-201ENST00000577272 72 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.32□□□□□ -2.2
VPS39Q96JC1 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
VPS39Q96JC1 RNU6-1188P-201ENST00000363795 107 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 RNU6-1145P-201ENST00000384246 107 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.31□□□□□ -2.2
VPS39Q96JC1 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.31□□□□□ -2.2
VPS39Q96JC1 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.31□□□□□ -2.2
VPS39Q96JC1 AC074290.1-201ENST00000448883 135 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 RPS27P1-201ENST00000450552 247 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 RNU1-123P-201ENST00000458950 160 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 SNORD65B-201ENST00000459126 73 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 RPS26P45-201ENST00000471748 340 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.31□□□□□ -2.2
VPS39Q96JC1 RNA5SP458-201ENST00000516188 119 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 AC023157.2-201ENST00000540596 141 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 AC090617.3-201ENST00000573670 475 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 MIR8065-201ENST00000620577 100 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.31□□□□□ -2.2
VPS39Q96JC1 MTND4LP32-201ENST00000636111 270 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.31□□□□□ -2.2
VPS39Q96JC1 Y_RNA.140-201ENST00000363474 103 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.3□□□□□ -2.2
VPS39Q96JC1 MIR515-2-201ENST00000384883 83 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 MIR515-1-201ENST00000384884 83 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
VPS39Q96JC1 RNA5SP323-201ENST00000391094 133 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 RPL21P1-201ENST00000399532 476 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 MTCYBP10-201ENST00000424905 650 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 AC098614.3-201ENST00000438957 440 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.3□□□□□ -2.2
VPS39Q96JC1 Y_RNA.635-201ENST00000459041 101 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 RPL31P58-201ENST00000469001 379 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 RPL17P19-201ENST00000489069 552 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 AC022493.2-201ENST00000506122 481 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 PRDX4P1-201ENST00000507189 574 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 RNU6-1146P-201ENST00000516282 102 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.3□□□□□ -2.2
VPS39Q96JC1 AC004584.2-201ENST00000570407 410 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 AC005730.3-201ENST00000583067 366 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 AP000942.3-201ENST00000603702 160 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 AC022217.4-201ENST00000604389 163 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 AC087588.2-201ENST00000617667 426 ntBASIC1.3□□□□□ -2.2
VPS39Q96JC1 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
VPS39Q96JC1 RNA5SP327-201ENST00000362494 101 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 RNU6-890P-201ENST00000384121 107 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 MIR513A1-201ENST00000385138 129 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms