Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL390123.1-201ENST00000603216 237 ntBASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 AC103591.3-201ENST00000608684 209 ntBASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 AC106754.2-201ENST00000623006 233 ntBASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 AC068137.4-201ENST00000638485 296 ntBASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 SNORD116-11-201ENST00000383882 92 ntBASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 SNORA70.7-201ENST00000384159 133 ntBASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 RNU6-373P-201ENST00000411247 98 ntBASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 USMG5P1-201ENST00000425964 177 ntBASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 AP000870.1-201ENST00000472927 406 ntBASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 RPS23P4-201ENST00000487908 423 ntBASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 RNA5SP404-201ENST00000517118 132 ntBASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 AC024909.2-201ENST00000553035 286 ntBASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 AL022345.2-201ENST00000606307 135 ntBASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 SNORA28-201ENST00000606769 126 ntBASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 AC010999.1-201ENST00000611856 324 ntBASIC1.17□□□□□ -2.22
HDDC3Q8N4P3 RNU6-1090P-201ENST00000364065 94 ntBASIC1.16□□□□□ -2.22
HDDC3Q8N4P3 RNU4-76P-201ENST00000364509 141 ntBASIC1.16□□□□□ -2.22
HDDC3Q8N4P3 Y_RNA.517-201ENST00000384551 106 ntBASIC1.16□□□□□ -2.22
HDDC3Q8N4P3 AC243428.1-201ENST00000421099 264 ntBASIC1.16□□□□□ -2.22
HDDC3Q8N4P3 STAG3L5P-204ENST00000443759 179 ntBASIC1.16□□□□□ -2.22
HDDC3Q8N4P3 RNU6-922P-201ENST00000516753 99 ntBASIC1.16□□□□□ -2.22
HDDC3Q8N4P3 AL590705.4-201ENST00000532209 134 ntBASIC1.16□□□□□ -2.22
HDDC3Q8N4P3 AC023157.2-201ENST00000540596 141 ntBASIC1.16□□□□□ -2.22
HDDC3Q8N4P3 MIR5696-201ENST00000578474 85 ntBASIC1.16□□□□□ -2.22
HDDC3Q8N4P3 AC091812.1-201ENST00000432235 1948 ntBASIC1.15□□□□□ -2.22
HDDC3Q8N4P3 RNU6-505P-201ENST00000384427 107 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.533-201ENST00000384596 114 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 MIR660-201ENST00000385235 97 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 RNU11-5P-201ENST00000391216 129 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 AC009161.1-201ENST00000417306 376 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 MRPS10P1-201ENST00000448483 130 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 OR2A41P-201ENST00000473586 105 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 AC010469.2-201ENST00000496412 480 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 AC090821.2-201ENST00000523552 176 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 AC011712.1-201ENST00000588959 234 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 AL513534.2-201ENST00000603836 250 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 AC024614.3-201ENST00000637860 256 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 AC018630.2-201ENST00000534866 2403 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 ZNF299P-201ENST00000406845 1804 ntBASIC1.15□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.405-201ENST00000383979 100 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.451-201ENST00000384200 100 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.524-201ENST00000384564 100 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.561-201ENST00000384694 100 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 MIR10B-201ENST00000385011 110 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 MTND3P21-201ENST00000433774 331 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 DYNLT3P2-201ENST00000442517 295 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 SNORD65B-201ENST00000459126 73 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 RN7SKP179-201ENST00000516126 217 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.683-201ENST00000516508 93 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.706-201ENST00000516933 99 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 SNORA70.22-201ENST00000517160 124 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 RNU6-165P-201ENST00000517170 99 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 AC091144.1-201ENST00000519573 138 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 CYCSP23-201ENST00000519781 313 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 MIR4778-201ENST00000577635 80 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 MIR3942-201ENST00000585264 109 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 AC027335.2-201ENST00000624030 375 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 AC006435.5-201ENST00000624486 112 ntBASIC1.14□□□□□ -2.23
HDDC3Q8N4P3 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.194-201ENST00000363985 102 ntBASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.265-201ENST00000364677 108 ntBASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.402-201ENST00000383972 102 ntBASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 USP9YP16-201ENST00000430287 407 ntBASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 MTND2P22-201ENST00000444325 1033 ntBASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 USP9YP23-201ENST00000455085 407 ntBASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 RNU1-54P-201ENST00000517181 120 ntBASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 AF250324.2-201ENST00000608299 610 ntBASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 AC048344.4-201ENST00000619744 527 ntBASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 AC090617.10-201ENST00000624308 134 ntBASIC1.13□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.205-201ENST00000364128 113 ntBASIC1.12□□□□□ -2.23
HDDC3Q8N4P3 RNU6-1013P-201ENST00000384180 107 ntBASIC1.12□□□□□ -2.23
HDDC3Q8N4P3 AC010598.1-201ENST00000510378 103 ntBASIC1.12□□□□□ -2.23
HDDC3Q8N4P3 SNORA31.2-201ENST00000516019 134 ntBASIC1.12□□□□□ -2.23
HDDC3Q8N4P3 RNU6-1114P-201ENST00000516022 107 ntBASIC1.12□□□□□ -2.23
HDDC3Q8N4P3 SNORA31.4-201ENST00000516049 129 ntBASIC1.12□□□□□ -2.23
HDDC3Q8N4P3 RPL21P9-201ENST00000556149 474 ntBASIC1.12□□□□□ -2.23
HDDC3Q8N4P3 AL050343.2-201ENST00000607338 280 ntBASIC1.12□□□□□ -2.23
HDDC3Q8N4P3 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.12□□□□□ -2.23
HDDC3Q8N4P3 MIR6767-201ENST00000637302 66 ntBASIC1.12□□□□□ -2.23
HDDC3Q8N4P3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 RNU6-199P-201ENST00000362954 107 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 RNU6-596P-201ENST00000365395 98 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.490-201ENST00000384413 102 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 RNU6-1105P-201ENST00000384774 107 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 MIR181A1-201ENST00000385026 110 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 138.5 ms