Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 AL713866.2-201ENST00000603579 219 ntBASIC2.35□□□□□ -2.03
TTC3P53804 AC091152.3-201ENST00000604227 325 ntBASIC2.35□□□□□ -2.03
TTC3P53804 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.35□□□□□ -2.03
TTC3P53804 AL137847.3-201ENST00000611521 109 ntBASIC2.35□□□□□ -2.03
TTC3P53804 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.35□□□□□ -2.03
TTC3P53804 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
TTC3P53804 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.35□□□□□ -2.03
TTC3P53804 RNU6-125P-201ENST00000384505 107 ntBASIC2.35□□□□□ -2.03
TTC3P53804 MIR208B-201ENST00000401172 77 ntBASIC2.35□□□□□ -2.03
TTC3P53804 RNA5SP181-201ENST00000410246 98 ntBASIC2.35□□□□□ -2.03
TTC3P53804 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.35□□□□□ -2.03
TTC3P53804 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.35□□□□□ -2.03
TTC3P53804 RNY3P16-201ENST00000516338 101 ntBASIC2.35□□□□□ -2.03
TTC3P53804 SNORA31.26-201ENST00000517250 137 ntBASIC2.35□□□□□ -2.03
TTC3P53804 CBX3P4-201ENST00000538909 354 ntBASIC2.35□□□□□ -2.03
TTC3P53804 AL008718.3-201ENST00000610217 321 ntBASIC2.35□□□□□ -2.03
TTC3P53804 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.35□□□□□ -2.03
TTC3P53804 AL078604.3-201ENST00000615580 211 ntBASIC2.35□□□□□ -2.03
TTC3P53804 AC068831.7-201ENST00000616954 363 ntBASIC2.35□□□□□ -2.03
TTC3P53804 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.35□□□□□ -2.03
TTC3P53804 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
TTC3P53804 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
TTC3P53804 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
TTC3P53804 MIR6073-201ENST00000352083 89 ntBASIC2.34□□□□□ -2.03
TTC3P53804 RNU6-923P-201ENST00000364753 107 ntBASIC2.34□□□□□ -2.03
TTC3P53804 Y_RNA.415-201ENST00000384012 112 ntBASIC2.34□□□□□ -2.03
TTC3P53804 RNU6-886P-201ENST00000384319 105 ntBASIC2.34□□□□□ -2.03
TTC3P53804 RNU6-918P-201ENST00000391219 106 ntBASIC2.34□□□□□ -2.03
TTC3P53804 RNU6-493P-201ENST00000391321 108 ntBASIC2.34□□□□□ -2.03
TTC3P53804 SNORA11.4-201ENST00000408823 129 ntBASIC2.34□□□□□ -2.03
TTC3P53804 RNU2-49P-201ENST00000410666 184 ntBASIC2.34□□□□□ -2.03
TTC3P53804 HMGN2P35-201ENST00000412164 270 ntBASIC2.34□□□□□ -2.03
TTC3P53804 HSPE1P13-201ENST00000451143 297 ntBASIC2.34□□□□□ -2.03
TTC3P53804 RPS20P10-201ENST00000451209 253 ntBASIC2.34□□□□□ -2.03
TTC3P53804 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.34□□□□□ -2.03
TTC3P53804 HMGB3P3-201ENST00000510526 400 ntBASIC2.34□□□□□ -2.03
TTC3P53804 RNU6-56P-201ENST00000516986 93 ntBASIC2.34□□□□□ -2.03
TTC3P53804 RNU2-12P-201ENST00000517216 168 ntBASIC2.34□□□□□ -2.03
TTC3P53804 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.34□□□□□ -2.03
TTC3P53804 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
TTC3P53804 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.34□□□□□ -2.03
TTC3P53804 AC103810.1-201ENST00000579873 453 ntBASIC2.34□□□□□ -2.03
TTC3P53804 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
TTC3P53804 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.04
TTC3P53804 SNORA25.1-201ENST00000362326 128 ntBASIC2.34□□□□□ -2.04
TTC3P53804 SNORD56.5-201ENST00000364281 72 ntBASIC2.34□□□□□ -2.04
TTC3P53804 Y_RNA.361-201ENST00000365515 120 ntBASIC2.34□□□□□ -2.04
TTC3P53804 RNU4-17P-201ENST00000365598 141 ntBASIC2.34□□□□□ -2.04
TTC3P53804 Y_RNA.506-201ENST00000384494 102 ntBASIC2.34□□□□□ -2.04
TTC3P53804 SNORA17.3-201ENST00000391159 129 ntBASIC2.34□□□□□ -2.04
TTC3P53804 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
TTC3P53804 RNU2-2P-201ENST00000410396 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.34□□□□□ -2.04
TTC3P53804 MRPS36P2-201ENST00000512569 299 ntBASIC2.34□□□□□ -2.04
TTC3P53804 SNORD11B-201ENST00000607707 90 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.15-201ENST00000611544 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.16-201ENST00000613119 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 MIR6845-201ENST00000613182 61 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.12-201ENST00000613778 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.20-201ENST00000613956 192 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.9-201ENST00000615427 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.11-201ENST00000616345 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.2-201ENST00000616535 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.3-201ENST00000617785 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.19-201ENST00000618602 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 RNU2-1-201ENST00000618664 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.6-201ENST00000619225 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.5-201ENST00000619465 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 U2.10-201ENST00000620268 191 ntBASIC2.34□□□□□ -2.04
TTC3P53804 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.04
TTC3P53804 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
TTC3P53804 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
TTC3P53804 RNU6-662P-201ENST00000384253 104 ntBASIC2.33□□□□□ -2.04
TTC3P53804 SNORA40.19-201ENST00000390846 128 ntBASIC2.33□□□□□ -2.04
TTC3P53804 RNA5SP354-201ENST00000391247 136 ntBASIC2.33□□□□□ -2.04
TTC3P53804 RPL23AP42-201ENST00000471152 471 ntBASIC2.33□□□□□ -2.04
TTC3P53804 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.33□□□□□ -2.04
TTC3P53804 SNORD116-28-201ENST00000516123 91 ntBASIC2.33□□□□□ -2.04
TTC3P53804 AC010297.1-201ENST00000623948 149 ntBASIC2.33□□□□□ -2.04
TTC3P53804 MIR3674-201ENST00000636576 68 ntBASIC2.33□□□□□ -2.04
TTC3P53804 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.33□□□□□ -2.04
TTC3P53804 SNORD114-7-201ENST00000362520 77 ntBASIC2.32□□□□□ -2.04
TTC3P53804 SNORD115-30-201ENST00000364117 82 ntBASIC2.32□□□□□ -2.04
TTC3P53804 Y_RNA.217-201ENST00000364214 105 ntBASIC2.32□□□□□ -2.04
TTC3P53804 Y_RNA.569-201ENST00000384749 103 ntBASIC2.32□□□□□ -2.04
TTC3P53804 Y_RNA.597-201ENST00000410463 100 ntBASIC2.32□□□□□ -2.04
TTC3P53804 RNU6-1077P-201ENST00000410506 102 ntBASIC2.32□□□□□ -2.04
TTC3P53804 COX6CP10-201ENST00000416832 224 ntBASIC2.32□□□□□ -2.04
TTC3P53804 AL161651.1-201ENST00000440882 223 ntBASIC2.32□□□□□ -2.04
TTC3P53804 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.32□□□□□ -2.04
TTC3P53804 Y_RNA.641-201ENST00000459414 105 ntBASIC2.32□□□□□ -2.04
TTC3P53804 Y_RNA.703-201ENST00000516846 111 ntBASIC2.32□□□□□ -2.04
TTC3P53804 MIR3670-2-201ENST00000582974 65 ntBASIC2.32□□□□□ -2.04
TTC3P53804 MIR3670-1-201ENST00000584160 65 ntBASIC2.32□□□□□ -2.04
TTC3P53804 MIR3670-3-201ENST00000584855 65 ntBASIC2.32□□□□□ -2.04
TTC3P53804 MIR4765-201ENST00000585007 77 ntBASIC2.32□□□□□ -2.04
TTC3P53804 MIR3670-4-201ENST00000612260 65 ntBASIC2.32□□□□□ -2.04
TTC3P53804 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
TTC3P53804 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.32□□□□□ -2.04
TTC3P53804 RNU6-653P-201ENST00000363074 106 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms