Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-318P-201ENST00000384283 103 ntBASIC2.12□□□□□ -2.07
CTCFP49711 RNU6-1235P-201ENST00000384559 107 ntBASIC2.12□□□□□ -2.07
CTCFP49711 SNORA8-201ENST00000384574 139 ntBASIC2.12□□□□□ -2.07
CTCFP49711 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
CTCFP49711 SNORA69.1-201ENST00000390904 137 ntBASIC2.12□□□□□ -2.07
CTCFP49711 Y_RNA.592-201ENST00000410274 109 ntBASIC2.12□□□□□ -2.07
CTCFP49711 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.12□□□□□ -2.07
CTCFP49711 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.12□□□□□ -2.07
CTCFP49711 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.12□□□□□ -2.07
CTCFP49711 RNU6-498P-201ENST00000459468 107 ntBASIC2.12□□□□□ -2.07
CTCFP49711 AC107393.1-201ENST00000512403 346 ntBASIC2.12□□□□□ -2.07
CTCFP49711 RNU6-948P-201ENST00000516374 107 ntBASIC2.12□□□□□ -2.07
CTCFP49711 AC022868.1-201ENST00000517767 391 ntBASIC2.12□□□□□ -2.07
CTCFP49711 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.12□□□□□ -2.07
CTCFP49711 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.12□□□□□ -2.07
CTCFP49711 SNRPGP19-201ENST00000603826 189 ntBASIC2.12□□□□□ -2.07
CTCFP49711 AC091925.1-201ENST00000623204 462 ntBASIC2.12□□□□□ -2.07
CTCFP49711 SNORA7.1-201ENST00000363750 139 ntBASIC2.11□□□□□ -2.07
CTCFP49711 RNY3P11-201ENST00000364153 102 ntBASIC2.11□□□□□ -2.07
CTCFP49711 Y_RNA.496-201ENST00000384444 101 ntBASIC2.11□□□□□ -2.07
CTCFP49711 MIR548B-201ENST00000385247 97 ntBASIC2.11□□□□□ -2.07
CTCFP49711 AC244636.1-201ENST00000421152 228 ntBASIC2.11□□□□□ -2.07
CTCFP49711 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.11□□□□□ -2.07
CTCFP49711 AC099799.1-201ENST00000439809 192 ntBASIC2.11□□□□□ -2.07
CTCFP49711 UBE2V1P7-201ENST00000446395 340 ntBASIC2.11□□□□□ -2.07
CTCFP49711 NDUFB4P10-201ENST00000452541 359 ntBASIC2.11□□□□□ -2.07
CTCFP49711 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.11□□□□□ -2.07
CTCFP49711 RNU7-57P-201ENST00000459540 60 ntBASIC2.11□□□□□ -2.07
CTCFP49711 MIR4299-201ENST00000577899 72 ntBASIC2.11□□□□□ -2.07
CTCFP49711 AL050343.2-201ENST00000607338 280 ntBASIC2.11□□□□□ -2.07
CTCFP49711 AL357075.2-201ENST00000614906 189 ntBASIC2.11□□□□□ -2.07
CTCFP49711 AC138305.3-201ENST00000624988 240 ntBASIC2.11□□□□□ -2.07
CTCFP49711 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.11□□□□□ -2.07
CTCFP49711 AL159152.1-201ENST00000635019 2587 ntBASIC2.1□□□□□ -2.07
CTCFP49711 RNU6-1301P-201ENST00000362724 104 ntBASIC2.1□□□□□ -2.07
CTCFP49711 U3.8-201ENST00000363675 217 ntBASIC2.1□□□□□ -2.07
CTCFP49711 RNU6-879P-201ENST00000364328 108 ntBASIC2.1□□□□□ -2.07
CTCFP49711 RNU4-42P-201ENST00000364738 142 ntBASIC2.1□□□□□ -2.07
CTCFP49711 Y_RNA.419-201ENST00000384041 102 ntBASIC2.1□□□□□ -2.07
CTCFP49711 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
CTCFP49711 AC114482.1-201ENST00000418010 247 ntBASIC2.1□□□□□ -2.07
CTCFP49711 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.1□□□□□ -2.07
CTCFP49711 AC027575.1-201ENST00000481064 460 ntBASIC2.1□□□□□ -2.07
CTCFP49711 RN7SL274P-201ENST00000492268 272 ntBASIC2.1□□□□□ -2.07
CTCFP49711 MIR2355-201ENST00000517199 87 ntBASIC2.1□□□□□ -2.07
CTCFP49711 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.1□□□□□ -2.07
CTCFP49711 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.1□□□□□ -2.07
CTCFP49711 Y_RNA.5-201ENST00000362334 102 ntBASIC2.09□□□□□ -2.07
CTCFP49711 Y_RNA.314-201ENST00000365114 102 ntBASIC2.09□□□□□ -2.07
CTCFP49711 RNA5SP501-201ENST00000410990 112 ntBASIC2.09□□□□□ -2.07
CTCFP49711 AC060773.1-201ENST00000421698 310 ntBASIC2.09□□□□□ -2.07
CTCFP49711 MTND4P28-201ENST00000426217 387 ntBASIC2.09□□□□□ -2.07
CTCFP49711 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.09□□□□□ -2.07
CTCFP49711 AC074290.1-201ENST00000448883 135 ntBASIC2.09□□□□□ -2.07
CTCFP49711 CHEK2P4-201ENST00000450340 246 ntBASIC2.09□□□□□ -2.07
CTCFP49711 RN7SKP49-201ENST00000516675 260 ntBASIC2.09□□□□□ -2.07
CTCFP49711 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.09□□□□□ -2.07
CTCFP49711 AL137100.2-201ENST00000555786 315 ntBASIC2.09□□□□□ -2.07
CTCFP49711 AC005786.1-201ENST00000588553 154 ntBASIC2.09□□□□□ -2.07
CTCFP49711 CYP2C61P-201ENST00000604072 290 ntBASIC2.09□□□□□ -2.07
CTCFP49711 AC012493.3-201ENST00000604494 112 ntBASIC2.09□□□□□ -2.07
CTCFP49711 snoZ196.1-201ENST00000625269 89 ntBASIC2.09□□□□□ -2.07
CTCFP49711 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.09□□□□□ -2.07
CTCFP49711 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.09□□□□□ -2.08
CTCFP49711 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CTCFP49711 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CTCFP49711 Y_RNA.252-201ENST00000364556 101 ntBASIC2.08□□□□□ -2.08
CTCFP49711 SNORA48.1-201ENST00000390879 135 ntBASIC2.08□□□□□ -2.08
CTCFP49711 RNA5SP489-201ENST00000410986 109 ntBASIC2.08□□□□□ -2.08
CTCFP49711 RNU6-57P-201ENST00000411348 103 ntBASIC2.08□□□□□ -2.08
CTCFP49711 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.08□□□□□ -2.08
CTCFP49711 RNU7-169P-201ENST00000459456 61 ntBASIC2.08□□□□□ -2.08
CTCFP49711 RNU6-221P-201ENST00000459541 99 ntBASIC2.08□□□□□ -2.08
CTCFP49711 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.08□□□□□ -2.08
CTCFP49711 RNU6-976P-201ENST00000516086 111 ntBASIC2.08□□□□□ -2.08
CTCFP49711 AC091144.1-201ENST00000519573 138 ntBASIC2.08□□□□□ -2.08
CTCFP49711 AC144568.1-201ENST00000520139 137 ntBASIC2.08□□□□□ -2.08
CTCFP49711 AC022254.1-201ENST00000567857 235 ntBASIC2.08□□□□□ -2.08
CTCFP49711 AL080274.1-201ENST00000605565 220 ntBASIC2.08□□□□□ -2.08
CTCFP49711 AC083806.3-201ENST00000614016 455 ntBASIC2.08□□□□□ -2.08
CTCFP49711 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.08□□□□□ -2.08
CTCFP49711 RNU6-797P-201ENST00000363101 109 ntBASIC2.07□□□□□ -2.08
CTCFP49711 Y_RNA.197-201ENST00000364004 102 ntBASIC2.07□□□□□ -2.08
CTCFP49711 Y_RNA.428-201ENST00000384078 102 ntBASIC2.07□□□□□ -2.08
CTCFP49711 Y_RNA.431-201ENST00000384086 102 ntBASIC2.07□□□□□ -2.08
CTCFP49711 Y_RNA.535-201ENST00000384612 99 ntBASIC2.07□□□□□ -2.08
CTCFP49711 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
CTCFP49711 SUMO2P12-201ENST00000405924 140 ntBASIC2.07□□□□□ -2.08
CTCFP49711 MIR1185-2-201ENST00000408687 86 ntBASIC2.07□□□□□ -2.08
CTCFP49711 RNU2-20P-201ENST00000410425 191 ntBASIC2.07□□□□□ -2.08
CTCFP49711 ELOCP21-201ENST00000412558 336 ntBASIC2.07□□□□□ -2.08
CTCFP49711 AC016909.1-201ENST00000415916 166 ntBASIC2.07□□□□□ -2.08
CTCFP49711 AC018865.2-201ENST00000423631 129 ntBASIC2.07□□□□□ -2.08
CTCFP49711 HMGN1P33-201ENST00000432945 451 ntBASIC2.07□□□□□ -2.08
CTCFP49711 RPS29P11-201ENST00000496507 171 ntBASIC2.07□□□□□ -2.08
CTCFP49711 RNVU1-2-201ENST00000516326 135 ntBASIC2.07□□□□□ -2.08
CTCFP49711 SNORD116.3-201ENST00000517176 78 ntBASIC2.07□□□□□ -2.08
CTCFP49711 AL157834.3-201ENST00000615543 103 ntBASIC2.07□□□□□ -2.08
CTCFP49711 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.07□□□□□ -2.08
CTCFP49711 AC091895.1-201ENST00000624494 256 ntBASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms