Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 MIR1185-2-201ENST00000408687 86 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 TOMM22P2-201ENST00000430735 237 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 AC016717.1-201ENST00000448918 286 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.08□□□□□ -2.08
SHMT1P34896 RNU6-625P-201ENST00000459412 107 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 AC022616.4-201ENST00000522985 181 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.08□□□□□ -2.08
SHMT1P34896 MIR4659A-201ENST00000580269 81 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 AL390123.1-201ENST00000603216 237 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 AL121655.1-201ENST00000605811 308 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.08□□□□□ -2.08
SHMT1P34896 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 Y_RNA.140-201ENST00000363474 103 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 RNA5SP493-201ENST00000364115 91 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 SNORD114-6-201ENST00000364393 72 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 SNORA63.7-201ENST00000365579 123 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 RNU6-1310P-201ENST00000384153 107 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 Y_RNA.645-201ENST00000391229 102 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 AL590004.1-201ENST00000405321 300 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 RNU6-101P-201ENST00000410323 104 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 AC108667.1-201ENST00000428618 249 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 RNA5SP233-201ENST00000459153 113 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 AC010469.2-201ENST00000496412 480 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 RNU6-408P-201ENST00000515910 100 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 RNU7-193P-201ENST00000516723 65 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 Y_RNA.713-201ENST00000517013 96 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 SNORA31.25-201ENST00000517242 134 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 AP003072.1-201ENST00000531740 145 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.07□□□□□ -2.08
SHMT1P34896 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.07□□□□□ -2.08
SHMT1P34896 MIR4529-201ENST00000578110 78 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 AC240442.1-201ENST00000616055 283 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 AC010205.1-201ENST00000616668 449 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 CENPCP1-201ENST00000533085 2578 ntBASIC2.07□□□□□ -2.08
SHMT1P34896 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
SHMT1P34896 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.06□□□□□ -2.08
SHMT1P34896 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.06□□□□□ -2.08
SHMT1P34896 MIR410-201ENST00000362222 80 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 RNU6-23P-201ENST00000363283 107 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 RNU6-457P-201ENST00000363999 107 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 RNU6-639P-201ENST00000384074 107 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 Y_RNA.551-201ENST00000384661 102 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 MIR17-201ENST00000385012 84 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
SHMT1P34896 RNA5SP465-201ENST00000391195 109 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 RNA5SP475-201ENST00000410568 110 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 RNU2-40P-201ENST00000410833 196 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 RNU6-57P-201ENST00000411348 103 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 U8.20-201ENST00000459445 131 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 RNU6-221P-201ENST00000459541 99 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 RNU6-856P-201ENST00000516959 98 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.06□□□□□ -2.08
SHMT1P34896 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.06□□□□□ -2.08
SHMT1P34896 AC104695.3-201ENST00000604052 296 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 AC124312.5-201ENST00000604451 268 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 Y_RNA.772-201ENST00000606692 102 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 Y_RNA.812-201ENST00000610788 101 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 Y_RNA.784-201ENST00000613803 101 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 Y_RNA.787-201ENST00000616522 101 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 AL590240.4-201ENST00000616908 390 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 Y_RNA.780-201ENST00000617336 101 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 Y_RNA.801-201ENST00000619005 101 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 MTND4P1-201ENST00000457501 1466 ntBASIC2.06□□□□□ -2.08
SHMT1P34896 AL159152.1-201ENST00000635019 2587 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 Y_RNA.326-201ENST00000365176 113 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 Y_RNA.389-201ENST00000383924 113 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 Y_RNA.458-201ENST00000384240 102 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 RNU11-3P-201ENST00000391111 133 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 AC008134.1-201ENST00000420943 193 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 BX510359.4-201ENST00000423750 193 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 RAB28P5-201ENST00000427490 651 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 RPL26P26-201ENST00000480251 434 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.05□□□□□ -2.08
SHMT1P34896 AC007229.1-201ENST00000590455 412 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 SDR42E1P4-201ENST00000620894 481 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 MIR3674-201ENST00000636576 68 ntBASIC2.05□□□□□ -2.08
SHMT1P34896 Y_RNA.471-201ENST00000384312 102 ntBASIC2.04□□□□□ -2.08
SHMT1P34896 RNU6-823P-201ENST00000391042 103 ntBASIC2.04□□□□□ -2.08
SHMT1P34896 AL356379.1-201ENST00000414105 126 ntBASIC2.04□□□□□ -2.08
SHMT1P34896 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.04□□□□□ -2.08
SHMT1P34896 MIR4419B-201ENST00000577260 68 ntBASIC2.04□□□□□ -2.08
SHMT1P34896 MIR3169-201ENST00000578032 83 ntBASIC2.04□□□□□ -2.08
SHMT1P34896 MIR3684-201ENST00000579779 74 ntBASIC2.04□□□□□ -2.08
SHMT1P34896 AC006504.6-201ENST00000590142 199 ntBASIC2.04□□□□□ -2.08
SHMT1P34896 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.04□□□□□ -2.08
SHMT1P34896 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SHMT1P34896 AC040896.1-201ENST00000613819 479 ntBASIC2.04□□□□□ -2.08
SHMT1P34896 AL162373.1-201ENST00000620433 407 ntBASIC2.04□□□□□ -2.08
SHMT1P34896 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SHMT1P34896 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
SHMT1P34896 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.03□□□□□ -2.08
SHMT1P34896 RNU6-961P-201ENST00000363893 105 ntBASIC2.03□□□□□ -2.08
SHMT1P34896 Y_RNA.380-201ENST00000365663 111 ntBASIC2.03□□□□□ -2.08
SHMT1P34896 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.03□□□□□ -2.08
SHMT1P34896 AL353689.1-201ENST00000438895 199 ntBASIC2.03□□□□□ -2.08
SHMT1P34896 RNU6-1146P-201ENST00000516282 102 ntBASIC2.03□□□□□ -2.08
SHMT1P34896 AC025647.1-201ENST00000517879 253 ntBASIC2.03□□□□□ -2.08
SHMT1P34896 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.03□□□□□ -2.08
SHMT1P34896 MIR4680-201ENST00000580906 66 ntBASIC2.03□□□□□ -2.08
SHMT1P34896 AL109918.3-201ENST00000603072 338 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 130.4 ms