Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SNORD14D-201ENST00000384390 87 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 SNORA80E-201ENST00000384744 137 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 AL357139.1-201ENST00000407792 426 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 RPL23AP36-201ENST00000413895 458 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 RPS15AP28-201ENST00000435088 386 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 AC093259.1-201ENST00000509755 300 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 AC008413.1-201ENST00000511864 177 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 AC009127.3-201ENST00000570531 403 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 MIR3126-201ENST00000577443 74 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 SNORD14A-201ENST00000606526 91 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 AC006001.4-201ENST00000622243 395 ntBASIC2.64□□□□□ -1.99
SMARCA1P28370 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.64□□□□□ -1.99
SMARCA1P28370 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.63□□□□□ -1.99
SMARCA1P28370 Y_RNA.14-201ENST00000362415 103 ntBASIC2.63□□□□□ -1.99
SMARCA1P28370 Y_RNA.332-201ENST00000365271 113 ntBASIC2.63□□□□□ -1.99
SMARCA1P28370 Y_RNA.447-201ENST00000384184 113 ntBASIC2.63□□□□□ -1.99
SMARCA1P28370 Y_RNA.562-201ENST00000384695 113 ntBASIC2.63□□□□□ -1.99
SMARCA1P28370 AL135786.1-201ENST00000415892 214 ntBASIC2.63□□□□□ -1.99
SMARCA1P28370 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.63□□□□□ -1.99
SMARCA1P28370 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.63□□□□□ -1.99
SMARCA1P28370 MTCO1P44-201ENST00000441935 243 ntBASIC2.63□□□□□ -1.99
SMARCA1P28370 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.63□□□□□ -1.99
SMARCA1P28370 AL137159.1-201ENST00000452808 512 ntBASIC2.63□□□□□ -1.99
SMARCA1P28370 AC005042.3-201ENST00000453230 174 ntBASIC2.63□□□□□ -1.99
SMARCA1P28370 RNU6-155P-201ENST00000516347 100 ntBASIC2.63□□□□□ -1.99
SMARCA1P28370 AC110588.1-201ENST00000559699 137 ntBASIC2.63□□□□□ -1.99
SMARCA1P28370 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.63□□□□□ -1.99
SMARCA1P28370 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.63□□□□□ -1.99
SMARCA1P28370 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.62□□□□□ -1.99
SMARCA1P28370 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.62□□□□□ -1.99
SMARCA1P28370 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.62□□□□□ -1.99
SMARCA1P28370 AL391987.6-201ENST00000305671 199 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
SMARCA1P28370 Y_RNA.188-201ENST00000363952 111 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 MIR144-201ENST00000384886 86 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 MT-TG-201ENST00000387429 68 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
SMARCA1P28370 MIR1261-201ENST00000408659 82 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 Y_RNA.618-201ENST00000410949 107 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 AC123900.1-201ENST00000420390 96 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.62□□□□□ -1.99
SMARCA1P28370 PRELID3BP1-201ENST00000457142 540 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 AC010531.2-201ENST00000465012 153 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 SNORA4.4-201ENST00000515921 135 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 RNA5SP200-201ENST00000516360 103 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 SCARNA24.2-201ENST00000516968 130 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 MIR3671-201ENST00000580455 88 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.62□□□□□ -1.99
SMARCA1P28370 SDR42E1P4-201ENST00000620894 481 ntBASIC2.62□□□□□ -1.99
SMARCA1P28370 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.62□□□□□ -1.99
SMARCA1P28370 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
SMARCA1P28370 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
SMARCA1P28370 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.61□□□□□ -1.99
SMARCA1P28370 MIR335-201ENST00000362173 94 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 Y_RNA.243-201ENST00000364481 109 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 Y_RNA.383-201ENST00000383855 97 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 Y_RNA.418-201ENST00000384029 102 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 Y_RNA.569-201ENST00000384749 103 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 U3.40-201ENST00000408706 208 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 RN7SKP192-201ENST00000411291 327 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 EDDM3CP-201ENST00000415977 425 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 AC114982.1-201ENST00000469402 321 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 RNU6-436P-201ENST00000516171 114 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 RNU6-948P-201ENST00000516374 107 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 RNU6-1271P-201ENST00000517049 105 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 AC010900.2-201ENST00000604508 210 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 AC009831.4-201ENST00000620744 325 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 snoZ196.1-201ENST00000625269 89 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 U6.115-201ENST00000636045 103 ntBASIC2.61□□□□□ -1.99
SMARCA1P28370 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SMARCA1P28370 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
SMARCA1P28370 ZNF658B-202ENST00000615961 3375 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 AC092881.1-201ENST00000638218 2733 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 Y_RNA.350-201ENST00000365409 98 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 Y_RNA.477-201ENST00000384352 108 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 SNORA48.3-201ENST00000391081 134 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 SNORA3.2-201ENST00000408221 125 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 RNU6-57P-201ENST00000411348 103 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.6□□□□□ -1.99
SMARCA1P28370 AC139712.2-201ENST00000424302 339 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.6□□□□□ -1.99
SMARCA1P28370 MRPS10P1-201ENST00000448483 130 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 RNU6-221P-201ENST00000459541 99 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 TRBV12-1-201ENST00000479785 344 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.6□□□□□ -1.99
SMARCA1P28370 RNA5SP137-201ENST00000516833 135 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.6□□□□□ -1.99
SMARCA1P28370 AC026271.5-201ENST00000577873 130 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 MIR3128-201ENST00000581957 66 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.6□□□□□ -1.99
SMARCA1P28370 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.6□□□□□ -1.99
SMARCA1P28370 MIR6840-201ENST00000611937 71 ntBASIC2.6□□□□□ -1.99
SMARCA1P28370 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SMARCA1P28370 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
SMARCA1P28370 SNORA3A-201ENST00000364113 130 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 SNORD115-30-201ENST00000364117 82 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 RNU6-326P-201ENST00000365480 107 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 SNORA70B-201ENST00000384210 135 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 MIR1262-201ENST00000408276 93 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 RNA5SP425-201ENST00000410336 112 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms