Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.04□□□□□ -2.08
LMX1BO60663 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
LMX1BO60663 Y_RNA.82-201ENST00000363000 102 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 Y_RNA.92-201ENST00000363043 102 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 Y_RNA.235-201ENST00000364412 102 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 Y_RNA.306-201ENST00000365015 102 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 Y_RNA.312-201ENST00000365089 102 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 Y_RNA.322-201ENST00000365151 102 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 Y_RNA.361-201ENST00000365515 120 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 MIR29B2-201ENST00000385055 81 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 AL359511.1-201ENST00000402970 211 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 MIR320B2-201ENST00000408479 138 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 CR769767.1-201ENST00000436337 346 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 AL135790.2-201ENST00000437701 267 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 POLR2KP2-201ENST00000438155 177 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.04□□□□□ -2.08
LMX1BO60663 SNORD2.1-201ENST00000458762 69 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 Y_RNA.650-201ENST00000459002 102 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
LMX1BO60663 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.04□□□□□ -2.08
LMX1BO60663 ATP5EP1-201ENST00000510257 156 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.04□□□□□ -2.08
LMX1BO60663 RNU6-191P-201ENST00000516295 94 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 Y_RNA.777-201ENST00000516982 102 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 RNU1-117P-201ENST00000517041 158 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.04□□□□□ -2.08
LMX1BO60663 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.04□□□□□ -2.08
LMX1BO60663 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.04□□□□□ -2.08
LMX1BO60663 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.04□□□□□ -2.08
LMX1BO60663 AC018630.3-201ENST00000542637 96 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 Y_RNA.771-201ENST00000598668 102 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 DEFB117-201ENST00000602356 141 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 AC046143.2-201ENST00000609789 160 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.04□□□□□ -2.08
LMX1BO60663 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
LMX1BO60663 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 Y_RNA.789-201ENST00000622480 102 ntBASIC2.04□□□□□ -2.08
LMX1BO60663 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
LMX1BO60663 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.04□□□□□ -2.08
LMX1BO60663 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.03□□□□□ -2.08
LMX1BO60663 RNU4-80P-201ENST00000363200 141 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 SNORD115-30-201ENST00000364117 82 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 Y_RNA.243-201ENST00000364481 109 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 RNU6-1310P-201ENST00000384153 107 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 RNU6-662P-201ENST00000384253 104 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 MIR218-1-201ENST00000384999 110 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 U3.40-201ENST00000408706 208 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 MIR1298-201ENST00000408783 112 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.03□□□□□ -2.08
LMX1BO60663 RPS15AP28-201ENST00000435088 386 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
LMX1BO60663 NDUFB4P10-201ENST00000452541 359 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.03□□□□□ -2.08
LMX1BO60663 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.03□□□□□ -2.08
LMX1BO60663 AC108210.2-201ENST00000503681 201 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 RNU6-155P-201ENST00000516347 100 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 SCARNA3-201ENST00000517097 143 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 AC021269.2-201ENST00000532318 330 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 CBX3P4-201ENST00000538909 354 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 AC015712.3-201ENST00000559380 164 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 MIR1273D-201ENST00000577266 86 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 MIR5194-201ENST00000582634 120 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 AL162424.1-201ENST00000602325 221 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 MIR1291-201ENST00000627649 87 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 AC068700.1-201ENST00000565862 3754 ntBASIC2.03□□□□□ -2.08
LMX1BO60663 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.02□□□□□ -2.09
LMX1BO60663 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
LMX1BO60663 U3.8-201ENST00000363675 217 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 Y_RNA.200-201ENST00000364018 102 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 Y_RNA.297-201ENST00000364950 91 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 SNORA72.2-201ENST00000365028 127 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 Y_RNA.329-201ENST00000365209 107 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 RNU6-1289P-201ENST00000384431 106 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 MIR586-201ENST00000385035 97 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 MIR95-201ENST00000385072 81 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 RNA5SP475-201ENST00000410568 110 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 RNU2-48P-201ENST00000410694 191 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 Y_RNA.626-201ENST00000411288 95 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 HMGN2P9-201ENST00000476875 229 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.02□□□□□ -2.09
LMX1BO60663 Y_RNA.700-201ENST00000516806 100 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 SNORA81.3-201ENST00000517283 198 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 MIR3199-1-201ENST00000582434 88 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 RPL17P51-201ENST00000605218 238 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 AC005828.6-201ENST00000606610 232 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 AC090517.3-201ENST00000625170 141 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 MIR1248-201ENST00000629190 106 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
LMX1BO60663 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.02□□□□□ -2.09
LMX1BO60663 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.02□□□□□ -2.09
LMX1BO60663 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.02□□□□□ -2.09
LMX1BO60663 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
LMX1BO60663 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
LMX1BO60663 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.02□□□□□ -2.09
LMX1BO60663 ZNF720P1-201ENST00000562403 1939 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
LMX1BO60663 SNORA25.1-201ENST00000362326 128 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 RNU6-545P-201ENST00000362681 104 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 Y_RNA.292-201ENST00000364904 97 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 PCNPP3-201ENST00000393579 471 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms