Protein–RNA interactions for Protein: A6NFN3

RBFOX3, RNA binding protein fox-1 homolog 3, humanhuman

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3A6NFN3 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.49□□□□□ -2.33
RBFOX3A6NFN3 MIR5000-201ENST00000577717 103 ntBASIC0.49□□□□□ -2.33
RBFOX3A6NFN3 AC010620.1-201ENST00000601088 1102 ntBASIC0.49□□□□□ -2.33
RBFOX3A6NFN3 AL096861.1-201ENST00000610899 123 ntBASIC0.49□□□□□ -2.33
RBFOX3A6NFN3 Z69908.1-201ENST00000622603 247 ntBASIC0.49□□□□□ -2.33
RBFOX3A6NFN3 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.49□□□□□ -2.33
RBFOX3A6NFN3 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.49□□□□□ -2.33
RBFOX3A6NFN3 MIRLET7C-201ENST00000362160 84 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 RNU6-727P-201ENST00000363592 107 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 Y_RNA.184-201ENST00000363884 108 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 RNU6-1322P-201ENST00000364309 107 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 RNU6-522P-201ENST00000364497 107 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 Y_RNA.355-201ENST00000365462 98 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 SNORA69-201ENST00000383895 132 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 MIR508-201ENST00000384857 115 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 RNA5SP482-201ENST00000391269 118 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 RNU4-55P-201ENST00000410731 137 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 DAP3P1-201ENST00000441522 278 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 MTND3P16-201ENST00000452205 344 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 RNU7-187P-201ENST00000458985 68 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 MTCO2P30-201ENST00000503662 364 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 RNU7-12P-201ENST00000516030 62 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 Y_RNA.673-201ENST00000516306 88 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 Y_RNA.695-201ENST00000516715 107 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 AC022868.1-201ENST00000517767 391 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 AC091178.2-201ENST00000584401 117 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 AL117336.2-201ENST00000602435 335 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 AC012557.2-201ENST00000605919 418 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 uc_338.17-201ENST00000619633 179 ntBASIC0.48□□□□□ -2.33
RBFOX3A6NFN3 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 AC104332.1-201ENST00000440471 797 ntBASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 snoU13.25-201ENST00000458945 104 ntBASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 AC113410.1-201ENST00000505029 247 ntBASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 RN7SKP298-201ENST00000515950 94 ntBASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 RNU7-172P-201ENST00000517125 64 ntBASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 DEFB108E-201ENST00000524692 240 ntBASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 AP003484.1-201ENST00000530974 250 ntBASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 AP002004.2-201ENST00000531656 154 ntBASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 AC073114.1-201ENST00000612027 490 ntBASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 AC009248.2-201ENST00000619826 254 ntBASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 AL391262.2-201ENST00000622466 494 ntBASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.47□□□□□ -2.33
RBFOX3A6NFN3 AC005592.1-201ENST00000566527 1640 ntBASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 Y_RNA.179-201ENST00000363844 90 ntBASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 RNU4-12P-201ENST00000365233 139 ntBASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 RNU6-541P-201ENST00000384709 110 ntBASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 RNU6-648P-201ENST00000410190 107 ntBASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 AC091021.1-201ENST00000468051 388 ntBASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 AC027419.1-201ENST00000522976 328 ntBASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 RPL21P9-201ENST00000556149 474 ntBASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 RMST_2.1-201ENST00000617263 136 ntBASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 MIR6515-201ENST00000619843 57 ntBASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
RBFOX3A6NFN3 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 SNORA1B-201ENST00000362535 133 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 Y_RNA.231-201ENST00000364358 102 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 RNU6-163P-201ENST00000384396 106 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 RNU6-790P-201ENST00000384479 105 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 AL157398.1-201ENST00000452981 186 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 PCMTD1P1-201ENST00000455560 355 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 RPL30P10-201ENST00000488148 337 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 RNU6-835P-201ENST00000516974 104 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 AC091144.1-201ENST00000519573 138 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 UBL5P4-201ENST00000562584 236 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 MIR3684-201ENST00000579779 74 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 AC097520.1-201ENST00000624435 385 ntBASIC0.45□□□□□ -2.34
RBFOX3A6NFN3 AC023934.1-201ENST00000574529 2389 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 RNU6-254P-201ENST00000363377 107 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 Y_RNA.151-201ENST00000363566 112 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 Y_RNA.481-201ENST00000384373 102 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 MIR526A1-201ENST00000384897 85 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 MIR10B-201ENST00000385011 110 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 AC093019.1-201ENST00000443135 252 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 RNU6-956P-201ENST00000458868 103 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 AC107401.1-201ENST00000503426 685 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 RNA5SP121-201ENST00000516537 101 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 AC145350.1-201ENST00000567426 208 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 AC025627.3-201ENST00000582078 182 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 POLR3GP2-201ENST00000588366 668 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 7SK.7-201ENST00000603504 247 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 ELL2P3-201ENST00000457883 1602 ntBASIC0.44□□□□□ -2.34
RBFOX3A6NFN3 RNU6-833P-201ENST00000363486 107 ntBASIC0.43□□□□□ -2.34
RBFOX3A6NFN3 Y_RNA.267-201ENST00000364679 109 ntBASIC0.43□□□□□ -2.34
RBFOX3A6NFN3 RNU6-1335P-201ENST00000365426 107 ntBASIC0.43□□□□□ -2.34
RBFOX3A6NFN3 Y_RNA.582-201ENST00000391023 95 ntBASIC0.43□□□□□ -2.34
RBFOX3A6NFN3 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.43□□□□□ -2.34
RBFOX3A6NFN3 AC092447.3-201ENST00000426027 686 ntBASIC0.43□□□□□ -2.34
RBFOX3A6NFN3 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.43□□□□□ -2.34
RBFOX3A6NFN3 U7.7-201ENST00000459276 60 ntBASIC0.43□□□□□ -2.34
RBFOX3A6NFN3 AP000870.1-201ENST00000472927 406 ntBASIC0.43□□□□□ -2.34
RBFOX3A6NFN3 RNU4-54P-201ENST00000516428 129 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 181.7 ms