Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC087588.2-201ENST00000617667 426 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 AL353997.5-201ENST00000618886 171 ntBASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.77□□□□□ -2.13
CPSF3Q9UKF6 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 snoU2-30.2-201ENST00000362805 70 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 SNORA33-201ENST00000363664 130 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.287-201ENST00000364853 94 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.356-201ENST00000365475 113 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.577-201ENST00000384794 101 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.632-201ENST00000459189 102 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 MIR2053-201ENST00000459295 91 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 RNU6-470P-201ENST00000515954 104 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 AC022868.1-201ENST00000517767 391 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 MIR4769-201ENST00000584126 77 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 AC069114.2-201ENST00000604699 304 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 AC112487.2-201ENST00000637950 304 ntBASIC1.76□□□□□ -2.13
CPSF3Q9UKF6 AC006026.1-201ENST00000444025 1803 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.70-201ENST00000362886 110 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 RNU6-879P-201ENST00000364328 108 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.384-201ENST00000383909 102 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 RNU6-1145P-201ENST00000384246 107 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 RNU6-318P-201ENST00000384283 103 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 MIR559-201ENST00000385188 96 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 RNU6-482P-201ENST00000391068 107 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 SNORA17.3-201ENST00000391159 129 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 RNU6-1156P-201ENST00000410365 100 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 MRPS18CP6-201ENST00000423587 223 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 CST2P1-201ENST00000425770 87 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 AC105758.1-201ENST00000506038 399 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.75□□□□□ -2.13
CPSF3Q9UKF6 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
CPSF3Q9UKF6 RNU6-417P-201ENST00000384712 107 ntBASIC1.74□□□□□ -2.13
CPSF3Q9UKF6 RN7SKP101-201ENST00000411376 320 ntBASIC1.74□□□□□ -2.13
CPSF3Q9UKF6 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.74□□□□□ -2.13
CPSF3Q9UKF6 RNU6-264P-201ENST00000517134 104 ntBASIC1.74□□□□□ -2.13
CPSF3Q9UKF6 MIR4285-201ENST00000581001 85 ntBASIC1.74□□□□□ -2.13
CPSF3Q9UKF6 AC080078.3-201ENST00000605407 463 ntBASIC1.74□□□□□ -2.13
CPSF3Q9UKF6 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.74□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.67-201ENST00000362870 100 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 RNU6-1019P-201ENST00000364424 107 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 RNU6-439P-201ENST00000384188 106 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.595-201ENST00000410403 105 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 ELOCP21-201ENST00000412558 336 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 RPS20P15-201ENST00000412792 311 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 AC008134.1-201ENST00000420943 193 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 UBE2V1P7-201ENST00000446395 340 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 RNU7-152P-201ENST00000458982 64 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 SNORD19B-201ENST00000459623 84 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 RNA5SP437-201ENST00000517249 129 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 AC084364.2-201ENST00000546924 395 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.804-201ENST00000615262 101 ntBASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.73□□□□□ -2.13
CPSF3Q9UKF6 AC073544.1-201ENST00000600110 1595 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 ZNF72P-201ENST00000425869 1908 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 RNU6-1301P-201ENST00000362724 104 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 RNU6-457P-201ENST00000363999 107 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 RNY3P11-201ENST00000364153 102 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 RNU6-1240P-201ENST00000365155 104 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 MIR625-201ENST00000385047 85 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 SNORA67.5-201ENST00000391036 107 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 Y_RNA.592-201ENST00000410274 109 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 MTND4LP11-201ENST00000422184 280 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 UQCRBP2-201ENST00000447827 297 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 RNU6-237P-201ENST00000515985 71 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 RNU6-107P-201ENST00000516643 102 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 RN7SKP49-201ENST00000516675 260 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 AC133104.2-201ENST00000615272 193 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 AC084781.2-201ENST00000615568 161 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 AC010615.1-201ENST00000594254 1764 ntBASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.72□□□□□ -2.13
CPSF3Q9UKF6 RNA5SP432-201ENST00000362480 116 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 Y_RNA.58-201ENST00000362807 102 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 Y_RNA.154-201ENST00000363624 102 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 SNORA63D-201ENST00000364359 132 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 RNY3P1-201ENST00000365085 102 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 RNY3-201ENST00000365484 102 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 RNU6-338P-201ENST00000383888 105 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 RNU6-1040P-201ENST00000383974 107 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 SNORA69.1-201ENST00000390904 137 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 RNA5SP467-201ENST00000391274 118 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 MIR1253-201ENST00000408273 105 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 AC114482.1-201ENST00000418010 247 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 AF228730.4-201ENST00000421457 183 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 TOMM22P2-201ENST00000430735 237 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 AC025465.3-201ENST00000510570 311 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 MTND3P22-201ENST00000510932 243 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 RNU6-1146P-201ENST00000516282 102 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 LARP7P1-201ENST00000605576 316 ntBASIC1.71□□□□□ -2.14
CPSF3Q9UKF6 MIR8074-201ENST00000615081 81 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 251.8 ms