Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.9□□□□□ -2.27
EXOSC4Q9NPD3 AL355802.3-201ENST00000607571 545 ntBASIC0.9□□□□□ -2.27
EXOSC4Q9NPD3 AL021879.1-201ENST00000611756 288 ntBASIC0.9□□□□□ -2.27
EXOSC4Q9NPD3 MIR6128-201ENST00000615528 109 ntBASIC0.9□□□□□ -2.27
EXOSC4Q9NPD3 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.9□□□□□ -2.27
EXOSC4Q9NPD3 U6.73-201ENST00000619194 103 ntBASIC0.9□□□□□ -2.27
EXOSC4Q9NPD3 AC027335.2-201ENST00000624030 375 ntBASIC0.9□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-222P-201ENST00000362438 107 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 Y_RNA.295-201ENST00000364918 102 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 SNORA70.7-201ENST00000384159 133 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 Y_RNA.516-201ENST00000384541 124 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-373P-201ENST00000411247 98 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 AC245047.3-201ENST00000429428 127 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 MTND4P18-201ENST00000447010 465 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 SNORD65B-201ENST00000459126 73 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 AC087343.1-201ENST00000477341 475 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 AL163540.1-201ENST00000485382 386 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 SNORD116-28-201ENST00000516123 91 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-566P-201ENST00000516790 107 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 AC023157.2-201ENST00000540596 141 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 AL390123.1-201ENST00000603216 237 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 HSPE1P19-201ENST00000603327 295 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 MIR8065-201ENST00000620577 100 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 AC106754.2-201ENST00000623006 233 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 AC068647.2-201ENST00000637380 353 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 AC018630.2-201ENST00000534866 2403 ntBASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.89□□□□□ -2.27
EXOSC4Q9NPD3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 RNU1-22P-201ENST00000363334 158 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 SNORD115-47-201ENST00000391226 86 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 RPL23AP36-201ENST00000413895 458 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 MTND3P23-201ENST00000431980 347 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 AC092989.1-201ENST00000481235 277 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 RNA5SP458-201ENST00000516188 119 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 RN7SKP88-201ENST00000516847 250 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 AC134698.4-201ENST00000523451 826 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 AL590705.4-201ENST00000532209 134 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 CBX3P8-201ENST00000532412 525 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 AL137100.2-201ENST00000555786 315 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 MIR3664-201ENST00000579074 99 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 7SK.7-201ENST00000603504 247 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 7SK.8-201ENST00000612110 250 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 7SK.11-201ENST00000615477 250 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 7SK.13-201ENST00000622040 250 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 AC099654.5-201ENST00000636479 350 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 MIR3662-201ENST00000637030 95 ntBASIC0.88□□□□□ -2.27
EXOSC4Q9NPD3 Y_RNA.106-201ENST00000363189 100 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-137P-201ENST00000363680 108 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 RNU1-124P-201ENST00000363861 145 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-595P-201ENST00000363944 107 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-280P-201ENST00000364145 104 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 Y_RNA.301-201ENST00000364990 103 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-281P-201ENST00000384212 103 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 MRPL42P3-201ENST00000401492 326 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 FGF7P8-201ENST00000402994 292 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 RN7SKP200-201ENST00000410564 320 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 MTND4LP16-201ENST00000440828 295 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 NDUFB4P10-201ENST00000452541 359 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 RPS27P22-201ENST00000478056 241 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 AC010469.2-201ENST00000496412 480 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 RNU4-49P-201ENST00000516080 140 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 RNU7-99P-201ENST00000516271 62 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-720P-201ENST00000516363 108 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 AC010999.1-201ENST00000611856 324 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 AC093783.1-201ENST00000612976 329 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 ZNF299P-201ENST00000406845 1804 ntBASIC0.87□□□□□ -2.27
EXOSC4Q9NPD3 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-1123P-201ENST00000362347 106 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-1266P-201ENST00000362794 105 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 Y_RNA.184-201ENST00000363884 108 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 Y_RNA.453-201ENST00000384223 109 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 SNORA25-201ENST00000384384 134 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 MIR548F1-201ENST00000408667 84 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 PGBD4P5-201ENST00000445958 426 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 MTND1P17-201ENST00000448961 204 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 AC093303.1-201ENST00000514549 295 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 Y_RNA.682-201ENST00000516457 100 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-165P-201ENST00000517170 99 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 RNU1-54P-201ENST00000517181 120 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 MIR4438-201ENST00000585271 93 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 AC022432.1-201ENST00000595739 310 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 AL133216.2-202ENST00000634512 349 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 AL391516.1-201ENST00000554380 2449 ntBASIC0.86□□□□□ -2.27
EXOSC4Q9NPD3 RNU4-38P-201ENST00000364472 129 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-1187P-201ENST00000364771 110 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-596P-201ENST00000365395 98 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms