Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 Y_RNA.592-201ENST00000410274 109 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 RNU6-1156P-201ENST00000410365 100 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 MRPS18CP6-201ENST00000423587 223 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 AC236972.2-201ENST00000434979 310 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 AC099677.2-201ENST00000436385 175 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.58□□□□□ -2.16
LIME1Q9H400 RNU7-57P-201ENST00000459540 60 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.58□□□□□ -2.16
LIME1Q9H400 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 RNU6-250P-201ENST00000516958 103 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 RNU6-264P-201ENST00000517134 104 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 SUMO2P18-201ENST00000518873 252 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 CYCSP23-201ENST00000519781 313 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.58□□□□□ -2.16
LIME1Q9H400 SUB1P4-201ENST00000566062 339 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 MIR4795-201ENST00000584182 89 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 C8orf59P2-201ENST00000603441 271 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 BX248123.2-201ENST00000606318 124 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 AL357075.2-201ENST00000614906 189 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.58□□□□□ -2.16
LIME1Q9H400 AC138305.3-201ENST00000624988 240 ntBASIC1.58□□□□□ -2.16
LIME1Q9H400 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
LIME1Q9H400 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
LIME1Q9H400 MIR410-201ENST00000362222 80 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 RNA5SP276-201ENST00000362580 94 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 Y_RNA.58-201ENST00000362807 102 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 RNY1P10-201ENST00000363268 113 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 Y_RNA.154-201ENST00000363624 102 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 RNU6-867P-201ENST00000364956 107 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 RNY3P1-201ENST00000365085 102 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 RNY3-201ENST00000365484 102 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 Y_RNA.358-201ENST00000365491 99 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 Y_RNA.463-201ENST00000384271 102 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 AC244636.1-201ENST00000421152 228 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.57□□□□□ -2.16
LIME1Q9H400 TOMM22P2-201ENST00000430735 237 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 AC099799.1-201ENST00000439809 192 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.57□□□□□ -2.16
LIME1Q9H400 MIR2053-201ENST00000459295 91 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 AC105758.1-201ENST00000506038 399 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 AC011406.1-201ENST00000512440 370 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 AC074133.1-201ENST00000515696 183 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 AC025647.1-201ENST00000517879 253 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.57□□□□□ -2.16
LIME1Q9H400 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.57□□□□□ -2.16
LIME1Q9H400 AC083806.3-201ENST00000614016 455 ntBASIC1.57□□□□□ -2.16
LIME1Q9H400 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
LIME1Q9H400 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
LIME1Q9H400 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
LIME1Q9H400 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.56□□□□□ -2.16
LIME1Q9H400 RNU6-1301P-201ENST00000362724 104 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 snoU2-30.2-201ENST00000362805 70 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 Y_RNA.122-201ENST00000363331 96 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 RNU4-42P-201ENST00000364738 142 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 SNORD48-201ENST00000364953 64 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 Y_RNA.315-201ENST00000365117 102 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 Y_RNA.604-201ENST00000410574 102 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 RNA5SP100-201ENST00000410903 110 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 RNA5SP59-201ENST00000410922 110 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 RNU6-57P-201ENST00000411348 103 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 ELOCP21-201ENST00000412558 336 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.56□□□□□ -2.16
LIME1Q9H400 MTND4P28-201ENST00000426217 387 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.56□□□□□ -2.16
LIME1Q9H400 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.56□□□□□ -2.16
LIME1Q9H400 RNU7-87P-201ENST00000459343 62 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 RNU6-911P-201ENST00000516523 104 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.56□□□□□ -2.16
LIME1Q9H400 MIR4299-201ENST00000577899 72 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 AC005034.5-201ENST00000604219 466 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 AL773524.1-201ENST00000614065 229 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 MIR338-201ENST00000636369 67 ntBASIC1.56□□□□□ -2.16
LIME1Q9H400 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
LIME1Q9H400 Y_RNA.116-201ENST00000363292 103 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 Y_RNA.146-201ENST00000363549 102 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 Y_RNA.252-201ENST00000364556 101 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 RNU6-1264P-201ENST00000383891 107 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 RNY3P4-201ENST00000384428 101 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 Y_RNA.496-201ENST00000384444 101 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 SNORA69.1-201ENST00000390904 137 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 AC008134.1-201ENST00000420943 193 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 CST2P1-201ENST00000425770 87 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 HMGN2P34-201ENST00000437647 269 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.55□□□□□ -2.16
LIME1Q9H400 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.55□□□□□ -2.16
LIME1Q9H400 RNU6-699P-201ENST00000517081 110 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 AC091144.1-201ENST00000519573 138 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 AL096840.1-201ENST00000603287 93 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 AC010900.2-201ENST00000604508 210 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 AL133255.1-201ENST00000606374 441 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 AL627230.6-201ENST00000611129 280 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 CENPCP1-201ENST00000533085 2578 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
LIME1Q9H400 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.55□□□□□ -2.16
LIME1Q9H400 Y_RNA.796-201ENST00000364268 102 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms