Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MTND4P12-201ENST00000498999 1377 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 ZNF299P-201ENST00000406845 1804 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 RNU4-62P-201ENST00000410125 130 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 RNU6-174P-201ENST00000410406 106 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 AP1B1P2-201ENST00000416196 106 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 AC245047.3-201ENST00000429428 127 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 RN7SKP88-201ENST00000516847 250 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 AL160236.1-201ENST00000556317 195 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 AC019288.1-201ENST00000557918 224 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 AL645939.4-201ENST00000604495 135 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 BNIP3P10-201ENST00000605360 577 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 AL365434.2-201ENST00000607979 234 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 7SK.8-201ENST00000612110 250 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 7SK.11-201ENST00000615477 250 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 7SK.13-201ENST00000622040 250 ntBASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.87□□□□□ -2.11
CHMP4AQ9BY43 RNU6-510P-201ENST00000391239 108 ntBASIC1.86□□□□□ -2.11
CHMP4AQ9BY43 AL356776.1-201ENST00000406574 447 ntBASIC1.86□□□□□ -2.11
CHMP4AQ9BY43 BTF3P4-201ENST00000418852 495 ntBASIC1.86□□□□□ -2.11
CHMP4AQ9BY43 AL354695.1-201ENST00000427935 228 ntBASIC1.86□□□□□ -2.11
CHMP4AQ9BY43 RPS27P1-201ENST00000450552 247 ntBASIC1.86□□□□□ -2.11
CHMP4AQ9BY43 AC009474.2-201ENST00000451383 136 ntBASIC1.86□□□□□ -2.11
CHMP4AQ9BY43 RNU6-329P-201ENST00000459618 107 ntBASIC1.86□□□□□ -2.11
CHMP4AQ9BY43 AP000870.1-201ENST00000472927 406 ntBASIC1.86□□□□□ -2.11
CHMP4AQ9BY43 AC103851.1-201ENST00000506833 274 ntBASIC1.86□□□□□ -2.11
CHMP4AQ9BY43 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.86□□□□□ -2.11
CHMP4AQ9BY43 AC021506.2-201ENST00000612354 169 ntBASIC1.86□□□□□ -2.11
CHMP4AQ9BY43 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.415-201ENST00000384012 112 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 RNU6-842P-201ENST00000384269 107 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.473-201ENST00000384333 102 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 RNA5SP109-201ENST00000391010 116 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 AC069439.1-201ENST00000494739 167 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 AF235103.2-201ENST00000525753 346 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 AC015720.1-201ENST00000565251 277 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 MIR3664-201ENST00000579074 99 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 MIR5695-201ENST00000579717 85 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 AL929325.1-201ENST00000603096 117 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 AL133216.2-202ENST00000634512 349 ntBASIC1.85□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.184-201ENST00000363884 108 ntBASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 RNU6-595P-201ENST00000363944 107 ntBASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 AC010154.1-201ENST00000425857 269 ntBASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 MTND1P4-201ENST00000435196 415 ntBASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 SNRPGP13-201ENST00000442212 177 ntBASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 RNU7-95P-201ENST00000459222 64 ntBASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 AC091179.3-201ENST00000474761 144 ntBASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 MTND5P5-201ENST00000503764 376 ntBASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 CYP3A52P-201ENST00000563326 91 ntBASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 snoU13.31-201ENST00000607291 104 ntBASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 MIR8054-201ENST00000620877 86 ntBASIC1.84□□□□□ -2.11
CHMP4AQ9BY43 RNU4-13P-201ENST00000364019 141 ntBASIC1.83□□□□□ -2.12
CHMP4AQ9BY43 MIR1323-201ENST00000408090 73 ntBASIC1.83□□□□□ -2.12
CHMP4AQ9BY43 Y_RNA.706-201ENST00000516933 99 ntBASIC1.83□□□□□ -2.12
CHMP4AQ9BY43 AP003033.1-201ENST00000527244 415 ntBASIC1.83□□□□□ -2.12
CHMP4AQ9BY43 CBX3P8-201ENST00000532412 525 ntBASIC1.83□□□□□ -2.12
CHMP4AQ9BY43 MIR4498-201ENST00000577599 66 ntBASIC1.83□□□□□ -2.12
CHMP4AQ9BY43 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.83□□□□□ -2.12
CHMP4AQ9BY43 AC010999.1-201ENST00000611856 324 ntBASIC1.83□□□□□ -2.12
CHMP4AQ9BY43 AC084782.3-201ENST00000612282 578 ntBASIC1.83□□□□□ -2.12
CHMP4AQ9BY43 MIR548F5-201ENST00000408421 86 ntBASIC1.82□□□□□ -2.12
CHMP4AQ9BY43 AC092473.1-201ENST00000441098 221 ntBASIC1.82□□□□□ -2.12
CHMP4AQ9BY43 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.82□□□□□ -2.12
CHMP4AQ9BY43 SNORD5.1-201ENST00000458800 75 ntBASIC1.82□□□□□ -2.12
CHMP4AQ9BY43 RNU6-1114P-201ENST00000516022 107 ntBASIC1.82□□□□□ -2.12
CHMP4AQ9BY43 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.82□□□□□ -2.12
CHMP4AQ9BY43 AL513534.2-201ENST00000603836 250 ntBASIC1.82□□□□□ -2.12
CHMP4AQ9BY43 AC100812.1-201ENST00000607622 580 ntBASIC1.82□□□□□ -2.12
CHMP4AQ9BY43 AC073349.3-201ENST00000617616 186 ntBASIC1.82□□□□□ -2.12
CHMP4AQ9BY43 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.82□□□□□ -2.12
CHMP4AQ9BY43 U6.108-201ENST00000637764 58 ntBASIC1.82□□□□□ -2.12
CHMP4AQ9BY43 Y_RNA.2-201ENST00000362330 96 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 RNU6-222P-201ENST00000362438 107 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 RNU6-192P-201ENST00000391253 100 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 MTND3P23-201ENST00000431980 347 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 RPS3AP52-201ENST00000435639 297 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 AL163540.1-201ENST00000485382 386 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 Y_RNA.683-201ENST00000516508 93 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 RNU6-107P-201ENST00000516643 102 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 RNU1-92P-201ENST00000517017 135 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 MIR4421-201ENST00000578133 69 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 AC011712.1-201ENST00000588959 234 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 AC022217.4-201ENST00000604389 163 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 AC018462.2-201ENST00000605375 395 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 AC016727.1-205ENST00000605437 569 ntBASIC1.81□□□□□ -2.12
CHMP4AQ9BY43 MIR10B-201ENST00000385011 110 ntBASIC1.8□□□□□ -2.12
CHMP4AQ9BY43 MIR320A-201ENST00000385302 82 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms