Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 AC004584.2-201ENST00000570407 410 ntBASIC1.36□□□□□ -2.19
ZNF560Q96MR9 AC022217.4-201ENST00000604389 163 ntBASIC1.36□□□□□ -2.19
ZNF560Q96MR9 AC100812.1-201ENST00000607622 580 ntBASIC1.36□□□□□ -2.19
ZNF560Q96MR9 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.36□□□□□ -2.19
ZNF560Q96MR9 MIR6128-201ENST00000615528 109 ntBASIC1.36□□□□□ -2.19
ZNF560Q96MR9 MIR26B-201ENST00000362251 77 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 RNY1P10-201ENST00000363268 113 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 RNU6-842P-201ENST00000384269 107 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 MIR513A1-201ENST00000385138 129 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 RNU1-139P-201ENST00000391307 165 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 RN7SKP200-201ENST00000410564 320 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 SNX2P2-201ENST00000424553 323 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 MTND3P23-201ENST00000431980 347 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 AL135790.2-201ENST00000437701 267 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 AL606517.2-201ENST00000442855 241 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 MTND4P18-201ENST00000447010 465 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 RPL30P7-201ENST00000479312 323 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 TRMT112P2-201ENST00000512910 132 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 RNU6-1114P-201ENST00000516022 107 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 RNU4-49P-201ENST00000516080 140 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 RNU7-99P-201ENST00000516271 62 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 RNU7-128P-201ENST00000517247 62 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 AC008269.2-201ENST00000561915 1105 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 FRG2DP-202ENST00000566967 323 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 AL929325.1-201ENST00000603096 117 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 MZT1P2-201ENST00000604387 248 ntBASIC1.35□□□□□ -2.19
ZNF560Q96MR9 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.35□□□□□ -2.19
ZNF560Q96MR9 Y_RNA.6-201ENST00000362350 114 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 RNU6-1059P-201ENST00000363752 98 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 RNU6-281P-201ENST00000384212 103 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 RNU6-1031P-201ENST00000384773 107 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 RNU6-510P-201ENST00000391239 108 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.34□□□□□ -2.19
ZNF560Q96MR9 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.34□□□□□ -2.19
ZNF560Q96MR9 AC005840.1-201ENST00000498412 377 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 SNORA31.10-201ENST00000516482 106 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 Y_RNA.683-201ENST00000516508 93 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 Y_RNA.706-201ENST00000516933 99 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 AL121579.1-201ENST00000555129 305 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 AC068338.1-201ENST00000565567 176 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 MIR4790-201ENST00000577799 79 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 AC018638.8-201ENST00000588755 281 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 AC073413.2-201ENST00000604332 360 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 AL355802.3-201ENST00000607571 545 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 AC021506.2-201ENST00000612354 169 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 AC040896.1-201ENST00000613819 479 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 MIR8054-201ENST00000620877 86 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 AC006435.5-201ENST00000624486 112 ntBASIC1.34□□□□□ -2.19
ZNF560Q96MR9 RNU6-1186P-201ENST00000410429 97 ntBASIC1.33□□□□□ -2.2
ZNF560Q96MR9 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.33□□□□□ -2.2
ZNF560Q96MR9 AC005002.2-201ENST00000438228 269 ntBASIC1.33□□□□□ -2.2
ZNF560Q96MR9 RNU7-94P-201ENST00000459576 63 ntBASIC1.33□□□□□ -2.2
ZNF560Q96MR9 RNU6-329P-201ENST00000459618 107 ntBASIC1.33□□□□□ -2.2
ZNF560Q96MR9 MTND5P5-201ENST00000503764 376 ntBASIC1.33□□□□□ -2.2
ZNF560Q96MR9 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.33□□□□□ -2.2
ZNF560Q96MR9 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.33□□□□□ -2.2
ZNF560Q96MR9 APOOP3-201ENST00000536787 586 ntBASIC1.33□□□□□ -2.2
ZNF560Q96MR9 MIR5695-201ENST00000579717 85 ntBASIC1.33□□□□□ -2.2
ZNF560Q96MR9 Y_RNA.184-201ENST00000363884 108 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 RNU6-392P-201ENST00000364926 101 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 RNU6-939P-201ENST00000384634 107 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 MRPL42P3-201ENST00000401492 326 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 MIR1277-201ENST00000408536 78 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.32□□□□□ -2.2
ZNF560Q96MR9 AC010154.1-201ENST00000425857 269 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 USP9YP16-201ENST00000430287 407 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 TOMM22P2-201ENST00000430735 237 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 PGBD4P5-201ENST00000445958 426 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.32□□□□□ -2.2
ZNF560Q96MR9 USP9YP23-201ENST00000455085 407 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 SNORD65B-201ENST00000459126 73 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 AC092989.1-201ENST00000481235 277 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.32□□□□□ -2.2
ZNF560Q96MR9 CYCSP23-201ENST00000519781 313 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.32□□□□□ -2.2
ZNF560Q96MR9 CBX3P8-201ENST00000532412 525 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 AL390123.1-201ENST00000603216 237 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 AL365434.2-201ENST00000607979 234 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 AC002553.4-201ENST00000616896 331 ntBASIC1.32□□□□□ -2.2
ZNF560Q96MR9 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
ZNF560Q96MR9 MIR337-201ENST00000362281 93 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 RNU6-593P-201ENST00000364716 112 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 RNA5SP259-201ENST00000365541 109 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 RNU6-440P-201ENST00000390882 105 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 MIR548F1-201ENST00000408667 84 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 AC245047.3-201ENST00000429428 127 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 RPS29P29-201ENST00000456396 171 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 AC011352.1-201ENST00000512300 793 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 Y_RNA.655-201ENST00000515919 96 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 Y_RNA.682-201ENST00000516457 100 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 AC091144.1-201ENST00000519573 138 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 AL512310.8-201ENST00000550183 120 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 AC090617.3-201ENST00000573670 475 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 MIR5701-3-201ENST00000578890 82 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 MIR5701-1-201ENST00000585138 82 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 AC018462.2-201ENST00000605375 395 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 MIR5701-2-201ENST00000615634 82 ntBASIC1.31□□□□□ -2.2
ZNF560Q96MR9 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
ZNF560Q96MR9 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
ZNF560Q96MR9 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 139.7 ms