Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC097462.1-201ENST00000514125 324 ntBASIC-0.11□□□□□ -2.43
CCDC42Q96M95 RNU4-77P-201ENST00000516692 156 ntBASIC-0.11□□□□□ -2.43
CCDC42Q96M95 RNA5SP54-201ENST00000516951 92 ntBASIC-0.11□□□□□ -2.43
CCDC42Q96M95 AC069113.3-201ENST00000521019 150 ntBASIC-0.11□□□□□ -2.43
CCDC42Q96M95 AC104383.1-201ENST00000530297 370 ntBASIC-0.11□□□□□ -2.43
CCDC42Q96M95 AC010620.1-201ENST00000601088 1102 ntBASIC-0.11□□□□□ -2.43
CCDC42Q96M95 MIR98-201ENST00000606724 119 ntBASIC-0.11□□□□□ -2.43
CCDC42Q96M95 U2.17-201ENST00000611454 95 ntBASIC-0.11□□□□□ -2.43
CCDC42Q96M95 AC078938.1-201ENST00000620993 318 ntBASIC-0.11□□□□□ -2.43
CCDC42Q96M95 IST1-227ENST00000626438 126 ntTSL 5 BASIC-0.11□□□□□ -2.43
CCDC42Q96M95 Y_RNA.122-201ENST00000363331 96 ntBASIC-0.12□□□□□ -2.43
CCDC42Q96M95 RNA5SP48-201ENST00000363969 126 ntBASIC-0.12□□□□□ -2.43
CCDC42Q96M95 Y_RNA.238-201ENST00000364441 102 ntBASIC-0.12□□□□□ -2.43
CCDC42Q96M95 SNORD87-201ENST00000364849 89 ntBASIC-0.12□□□□□ -2.43
CCDC42Q96M95 MIR520C-201ENST00000385005 87 ntBASIC-0.12□□□□□ -2.43
CCDC42Q96M95 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.12□□□□□ -2.43
CCDC42Q96M95 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC-0.12□□□□□ -2.43
CCDC42Q96M95 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC-0.12□□□□□ -2.43
CCDC42Q96M95 U8.21-201ENST00000459536 136 ntBASIC-0.12□□□□□ -2.43
CCDC42Q96M95 RNU6-1116P-201ENST00000517269 99 ntBASIC-0.12□□□□□ -2.43
CCDC42Q96M95 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC-0.12□□□□□ -2.43
CCDC42Q96M95 RPL21P9-201ENST00000556149 474 ntBASIC-0.12□□□□□ -2.43
CCDC42Q96M95 MTND4P33-201ENST00000556706 766 ntBASIC-0.12□□□□□ -2.43
CCDC42Q96M95 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.12□□□□□ -2.43
CCDC42Q96M95 AC006566.1-201ENST00000608943 513 ntBASIC-0.12□□□□□ -2.43
CCDC42Q96M95 OR5AK4P-201ENST00000635912 903 ntBASIC-0.12□□□□□ -2.43
CCDC42Q96M95 RNU5F-7P-201ENST00000363696 115 ntBASIC-0.13□□□□□ -2.43
CCDC42Q96M95 SNORA40.8-201ENST00000411034 126 ntBASIC-0.13□□□□□ -2.43
CCDC42Q96M95 ZNF885P-201ENST00000420174 1098 ntBASIC-0.13□□□□□ -2.43
CCDC42Q96M95 AL392103.1-201ENST00000447000 198 ntBASIC-0.13□□□□□ -2.43
CCDC42Q96M95 ELOCP24-201ENST00000456370 334 ntBASIC-0.13□□□□□ -2.43
CCDC42Q96M95 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC-0.13□□□□□ -2.43
CCDC42Q96M95 SNORA25.12-201ENST00000516202 82 ntBASIC-0.13□□□□□ -2.43
CCDC42Q96M95 SNORA74.3-201ENST00000517108 154 ntBASIC-0.13□□□□□ -2.43
CCDC42Q96M95 RNU7-172P-201ENST00000517125 64 ntBASIC-0.13□□□□□ -2.43
CCDC42Q96M95 MIR4768-201ENST00000585270 74 ntBASIC-0.13□□□□□ -2.43
CCDC42Q96M95 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC-0.13□□□□□ -2.43
CCDC42Q96M95 MIR7844-201ENST00000616161 122 ntBASIC-0.13□□□□□ -2.43
CCDC42Q96M95 AC027279.3-201ENST00000625055 122 ntBASIC-0.13□□□□□ -2.43
CCDC42Q96M95 MIR32-201ENST00000384965 70 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 MIR487A-201ENST00000385009 80 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 MIR452-201ENST00000385020 85 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.14□□□□□ -2.43
CCDC42Q96M95 MIR450B-201ENST00000401182 78 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 RNU2-29P-201ENST00000410423 189 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 Z98949.2-201ENST00000440996 144 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 AC092989.1-201ENST00000481235 277 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 MTATP6P9-201ENST00000515039 680 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 MTND1P35-201ENST00000526739 508 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 AL137161.1-201ENST00000532231 390 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 MIR3682-201ENST00000581338 84 ntBASIC-0.14□□□□□ -2.43
CCDC42Q96M95 SNORD115-8-201ENST00000363856 82 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 SNORD114-9-201ENST00000364370 72 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 SNORD115-38-201ENST00000365037 82 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 RNU6-815P-201ENST00000384080 113 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 SNORA40.4-201ENST00000390971 128 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 SNORD71-201ENST00000411292 86 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 AC073261.1-201ENST00000429409 121 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-0.15□□□□□ -2.43
CCDC42Q96M95 UBE2D3P4-201ENST00000441973 436 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 AC093534.1-201ENST00000504977 132 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 AC010598.1-201ENST00000510378 103 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 MIR3612-201ENST00000579753 87 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 AC010999.1-201ENST00000611856 324 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 AC007671.2-201ENST00000637344 619 ntBASIC-0.15□□□□□ -2.43
CCDC42Q96M95 RNU6-654P-201ENST00000364373 107 ntBASIC-0.16□□□□□ -2.44
CCDC42Q96M95 RNY4P34-201ENST00000364779 95 ntBASIC-0.16□□□□□ -2.44
CCDC42Q96M95 SNORA2B-201ENST00000384583 137 ntBASIC-0.16□□□□□ -2.44
CCDC42Q96M95 MIR520F-201ENST00000384824 87 ntBASIC-0.16□□□□□ -2.44
CCDC42Q96M95 AC098592.1-201ENST00000419352 333 ntBASIC-0.16□□□□□ -2.44
CCDC42Q96M95 ZNF736P12Y-201ENST00000443152 1243 ntBASIC-0.16□□□□□ -2.44
CCDC42Q96M95 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-0.16□□□□□ -2.44
CCDC42Q96M95 RNA5SP227-201ENST00000516184 113 ntBASIC-0.16□□□□□ -2.44
CCDC42Q96M95 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC-0.16□□□□□ -2.44
CCDC42Q96M95 AC120024.3-201ENST00000603167 156 ntBASIC-0.16□□□□□ -2.44
CCDC42Q96M95 Z84480.1-201ENST00000605131 311 ntBASIC-0.16□□□□□ -2.44
CCDC42Q96M95 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC-0.17□□□□□ -2.44
CCDC42Q96M95 RNU6-369P-201ENST00000362515 102 ntBASIC-0.17□□□□□ -2.44
CCDC42Q96M95 SNORD113-6-201ENST00000363345 75 ntBASIC-0.17□□□□□ -2.44
CCDC42Q96M95 RNU4-41P-201ENST00000364426 143 ntBASIC-0.17□□□□□ -2.44
CCDC42Q96M95 RNU6-1317P-201ENST00000364582 104 ntBASIC-0.17□□□□□ -2.44
CCDC42Q96M95 RNA5SP517-201ENST00000364724 117 ntBASIC-0.17□□□□□ -2.44
CCDC42Q96M95 SSR1P2-201ENST00000415208 787 ntBASIC-0.17□□□□□ -2.44
CCDC42Q96M95 PCNPP5-201ENST00000452246 481 ntBASIC-0.17□□□□□ -2.44
CCDC42Q96M95 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC-0.17□□□□□ -2.44
CCDC42Q96M95 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC-0.17□□□□□ -2.44
CCDC42Q96M95 SCOCP1-201ENST00000554676 349 ntBASIC-0.17□□□□□ -2.44
CCDC42Q96M95 MIR4764-201ENST00000580680 88 ntBASIC-0.17□□□□□ -2.44
CCDC42Q96M95 ANKRD30BP1-201ENST00000451052 2186 ntBASIC-0.18□□□□□ -2.44
CCDC42Q96M95 RNU6-222P-201ENST00000362438 107 ntBASIC-0.18□□□□□ -2.44
CCDC42Q96M95 RNA5SP214-201ENST00000363378 118 ntBASIC-0.18□□□□□ -2.44
CCDC42Q96M95 RNY1-201ENST00000364228 113 ntBASIC-0.18□□□□□ -2.44
CCDC42Q96M95 SNORD14.1-201ENST00000365609 90 ntBASIC-0.18□□□□□ -2.44
CCDC42Q96M95 RNU6-606P-201ENST00000384721 111 ntBASIC-0.18□□□□□ -2.44
CCDC42Q96M95 MIR520G-201ENST00000385064 90 ntBASIC-0.18□□□□□ -2.44
CCDC42Q96M95 MIR520H-201ENST00000385126 88 ntBASIC-0.18□□□□□ -2.44
CCDC42Q96M95 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.18□□□□□ -2.44
CCDC42Q96M95 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-0.18□□□□□ -2.44
CCDC42Q96M95 MTND4P18-201ENST00000447010 465 ntBASIC-0.18□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms