Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL163540.1-201ENST00000485382 386 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.675-201ENST00000516389 149 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-856P-201ENST00000516959 98 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AL160236.1-201ENST00000556317 195 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AL353149.1-201ENST00000610667 244 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 MIR8081-201ENST00000611533 95 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AC091925.1-201ENST00000623204 462 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 ZNF299P-201ENST00000406845 1804 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.138-201ENST00000363462 102 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 SNORA72.2-201ENST00000365028 127 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-968P-201ENST00000384076 107 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.579-201ENST00000390939 94 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 AC004866.1-201ENST00000411748 78 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 MRPS18CP6-201ENST00000423587 223 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 AL353997.1-201ENST00000432936 108 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 AC099677.2-201ENST00000436385 175 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 CHEK2P4-201ENST00000450340 246 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 snoU13.30-201ENST00000458951 104 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.639-201ENST00000458981 102 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 AC067942.3-201ENST00000512025 362 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 ACA59.1-201ENST00000515966 143 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 RNA5SP437-201ENST00000517249 129 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 AC084364.2-201ENST00000546924 395 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 AC022140.2-201ENST00000623500 188 ntBASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.42□□□□□ -2.18
ZNF540Q8NDQ6 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.2-201ENST00000362330 96 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.5-201ENST00000362334 102 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.395-201ENST00000383945 109 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 MIR549A-201ENST00000385268 96 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 RNA5SP494-201ENST00000410653 129 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 RPS26P42-201ENST00000413485 326 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 AL354751.2-201ENST00000415471 210 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 AL135790.2-201ENST00000437701 267 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.653-201ENST00000459091 95 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 MIR2053-201ENST00000459295 91 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 AC093303.1-201ENST00000514549 295 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 AC027288.2-201ENST00000553028 243 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 AL078604.3-201ENST00000615580 211 ntBASIC1.41□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.187-201ENST00000363918 113 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-457P-201ENST00000363999 107 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 RNU1-42P-201ENST00000364033 160 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-694P-201ENST00000364071 147 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 SNORA25.8-201ENST00000364831 128 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.384-201ENST00000383909 102 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-1040P-201ENST00000383974 107 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-17P-201ENST00000384245 107 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.463-201ENST00000384271 102 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-18P-201ENST00000384527 107 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-939P-201ENST00000384634 107 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 MRPL35P1-201ENST00000404272 572 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 MIR1304-201ENST00000408243 91 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 RPS27P16-201ENST00000425758 201 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 MTCYBP6-201ENST00000441810 138 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 RPL30P15-201ENST00000457129 321 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 U8.22-201ENST00000459141 133 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 snoU13.27-201ENST00000459278 104 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 AC022493.2-201ENST00000506122 481 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 AC026470.2-201ENST00000561492 181 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 MIR4753-201ENST00000585119 83 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 AC087588.2-201ENST00000617667 426 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 AC126177.8-201ENST00000618339 1015 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 AL160413.1-201ENST00000622780 310 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 AC138305.3-201ENST00000624988 240 ntBASIC1.4□□□□□ -2.19
ZNF540Q8NDQ6 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.31-201ENST00000362574 102 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 RNU1-62P-201ENST00000362599 164 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 RNY1P16-201ENST00000363063 111 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 SNORD115-32-201ENST00000364079 82 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.405-201ENST00000383979 100 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.451-201ENST00000384200 100 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-474P-201ENST00000384243 107 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.524-201ENST00000384564 100 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.561-201ENST00000384694 100 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 MIR515-2-201ENST00000384883 83 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 MIR515-1-201ENST00000384884 83 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 MIR517C-201ENST00000385103 95 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 COX6CP10-201ENST00000416832 224 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 BTF3P4-201ENST00000418852 495 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 AC007098.1-201ENST00000420122 367 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 AL137792.2-201ENST00000443484 235 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 OR2AQ1P-201ENST00000451972 200 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms