Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC025281.1-201ENST00000567026 265 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 AC026241.1-201ENST00000517873 2142 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 AC069528.2-201ENST00000624849 1991 ntBASIC3.4□□□□□ -1.87
USHBP1Q8N6Y0 AC010329.5-201ENST00000623497 2174 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 ZNF658B-202ENST00000615961 3375 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 U8.2-201ENST00000363156 134 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 SNORD115-30-201ENST00000364117 82 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 AL031003.1-201ENST00000404229 172 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 AL365496.1-201ENST00000426885 215 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 TOMM22P2-201ENST00000430735 237 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 RNU6-62P-201ENST00000516526 102 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 HSPE1P18-201ENST00000517602 280 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 AC100767.1-201ENST00000528178 123 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 AC013791.1-201ENST00000616619 62 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 CTSLP2-204ENST00000629029 392 ntBASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
USHBP1Q8N6Y0 AL161431.1-201ENST00000618966 4205 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 Y_RNA.215-201ENST00000364204 112 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 Y_RNA.287-201ENST00000364853 94 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 RNU6-275P-201ENST00000364910 107 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 RNU6-959P-201ENST00000384671 107 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 Y_RNA.568-201ENST00000384742 113 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 MIR27B-201ENST00000385129 97 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 MIR181B1-201ENST00000385240 110 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 RNA5SP504-201ENST00000410676 117 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 Z98742.3-201ENST00000418637 326 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 AC112771.1-201ENST00000463581 102 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 RPL36AP48-201ENST00000485521 314 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 DEFB131C-201ENST00000528817 165 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 MIR3684-201ENST00000579779 74 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 uc_338.14-201ENST00000613162 166 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 AC091895.1-201ENST00000624494 256 ntBASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
USHBP1Q8N6Y0 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 U3.8-201ENST00000363675 217 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 SNORA67.2-201ENST00000384300 149 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 MIR626-201ENST00000385032 94 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 RNU6-131P-201ENST00000391144 107 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 SNORA26.5-201ENST00000391215 123 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 RNU6-381P-201ENST00000391259 108 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 EBAG9P1-201ENST00000418955 543 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 AL162725.1-201ENST00000435405 301 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 AC092185.1-201ENST00000491371 97 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 RN7SKP164-201ENST00000516138 266 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 SNORA9.3-201ENST00000516383 129 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 RPL17P51-201ENST00000605218 238 ntBASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
USHBP1Q8N6Y0 SNORA8.3-201ENST00000384679 139 ntBASIC3.36□□□□□ -1.87
USHBP1Q8N6Y0 RNU6-239P-201ENST00000390990 99 ntBASIC3.36□□□□□ -1.87
USHBP1Q8N6Y0 RNA5SP210-201ENST00000391034 120 ntBASIC3.36□□□□□ -1.87
USHBP1Q8N6Y0 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.36□□□□□ -1.87
USHBP1Q8N6Y0 AC079598.5-201ENST00000547460 117 ntBASIC3.36□□□□□ -1.87
USHBP1Q8N6Y0 MIR4744-201ENST00000581563 82 ntBASIC3.36□□□□□ -1.87
USHBP1Q8N6Y0 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
USHBP1Q8N6Y0 snoU2_19.1-201ENST00000362361 80 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 RNU6-103P-201ENST00000363686 107 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 RNU6-899P-201ENST00000363947 107 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 RNU6-151P-201ENST00000364158 107 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 Y_RNA.293-201ENST00000364908 93 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 SNORD50B-201ENST00000364995 70 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 Y_RNA.368-201ENST00000365547 113 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 SNORA72.4-201ENST00000384174 132 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 RNU6-22P-201ENST00000384355 107 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 RNU2-51P-201ENST00000410708 197 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 CR769767.1-201ENST00000436337 346 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 AL135790.2-201ENST00000437701 267 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 RPS29P21-201ENST00000496272 170 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 Y_RNA.778-201ENST00000620203 90 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 U6.115-201ENST00000636045 103 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 AC134026.1-201ENST00000623249 2239 ntBASIC3.35□□□□□ -1.87
USHBP1Q8N6Y0 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 AC110774.1-201ENST00000623567 2018 ntBASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 Y_RNA.341-201ENST00000365341 102 ntBASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 Y_RNA.456-201ENST00000384232 111 ntBASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 RNU6-578P-201ENST00000390980 103 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms