Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNY3P3-201ENST00000363816 102 ntBASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 Y_RNA.354-201ENST00000365448 111 ntBASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 RNU6-793P-201ENST00000384233 104 ntBASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 RNU6-342P-201ENST00000384521 104 ntBASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 MRPL42P3-201ENST00000401492 326 ntBASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 AL034345.1-201ENST00000407768 123 ntBASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 MIR1185-2-201ENST00000408687 86 ntBASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 TOMM22P2-201ENST00000430735 237 ntBASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 SNORA31.10-201ENST00000516482 106 ntBASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 APOOP3-201ENST00000536787 586 ntBASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 AC068647.2-201ENST00000637380 353 ntBASIC1.24□□□□□ -2.21
HDDC3Q8N4P3 Y_RNA.100-201ENST00000363141 102 ntBASIC1.23□□□□□ -2.21
HDDC3Q8N4P3 Y_RNA.256-201ENST00000364594 104 ntBASIC1.23□□□□□ -2.21
HDDC3Q8N4P3 AL356776.1-201ENST00000406574 447 ntBASIC1.23□□□□□ -2.21
HDDC3Q8N4P3 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.23□□□□□ -2.21
HDDC3Q8N4P3 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.23□□□□□ -2.21
HDDC3Q8N4P3 AC093852.1-201ENST00000503587 266 ntBASIC1.23□□□□□ -2.21
HDDC3Q8N4P3 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.23□□□□□ -2.21
HDDC3Q8N4P3 AL021879.1-201ENST00000611756 288 ntBASIC1.23□□□□□ -2.21
HDDC3Q8N4P3 PVT1_3.1-201ENST00000620853 95 ntBASIC1.23□□□□□ -2.21
HDDC3Q8N4P3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 RNU6-451P-201ENST00000362921 107 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 Y_RNA.414-201ENST00000384011 101 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 RNU6-440P-201ENST00000390882 105 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 RNU6-332P-201ENST00000391193 108 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 MTATP6P13-201ENST00000438531 667 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 HSPE1P13-201ENST00000451143 297 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 RNU7-94P-201ENST00000459576 63 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 RPL39P38-201ENST00000467018 153 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 AC091179.3-201ENST00000474761 144 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 AC087343.1-201ENST00000477341 475 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 RPL30P10-201ENST00000488148 337 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 RNU6-314P-201ENST00000516574 104 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 UBL5P4-201ENST00000562584 236 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 AC068338.1-201ENST00000565567 176 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 MIR4295-201ENST00000585286 85 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 U6.73-201ENST00000619194 103 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 AC009248.2-201ENST00000619826 254 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 MIR1321-201ENST00000637766 79 ntBASIC1.22□□□□□ -2.21
HDDC3Q8N4P3 Y_RNA.38-201ENST00000362617 102 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 Y_RNA.179-201ENST00000363844 90 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 Y_RNA.212-201ENST00000364177 102 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 RNU6-1080P-201ENST00000383982 107 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 MIR222-201ENST00000384992 110 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 RNU6-159P-201ENST00000391080 106 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 MIR548J-201ENST00000408833 112 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 RNU7-66P-201ENST00000459469 62 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 AC092991.1-201ENST00000477176 376 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 RNU7-99P-201ENST00000516271 62 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 AC134698.4-201ENST00000523451 826 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 AC004584.2-201ENST00000570407 410 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 MIR4273-201ENST00000582824 84 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 MIR3672-201ENST00000584290 82 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 SNORD3E-202ENST00000627253 216 ntBASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.21□□□□□ -2.22
HDDC3Q8N4P3 RNA5SP325-201ENST00000363756 130 ntBASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 Y_RNA.184-201ENST00000363884 108 ntBASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 RNU6-17P-201ENST00000384245 107 ntBASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 RNU6-18P-201ENST00000384527 107 ntBASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 AC015922.2-201ENST00000435593 184 ntBASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 RPS29P29-201ENST00000456396 171 ntBASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 RNU7-175P-201ENST00000515915 61 ntBASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 RNU6-107P-201ENST00000516643 102 ntBASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 AC245505.1-201ENST00000556398 224 ntBASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.2□□□□□ -2.22
HDDC3Q8N4P3 Y_RNA.135-201ENST00000363439 95 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 RNU6-306P-201ENST00000384617 107 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 RNU6-506P-201ENST00000516553 94 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 RNU7-128P-201ENST00000517247 62 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 AC027419.1-201ENST00000522976 328 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 AK6P2-201ENST00000549020 471 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 FRG2DP-202ENST00000566967 323 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 MIR4438-201ENST00000585271 93 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 AL162424.1-201ENST00000602325 221 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 BX284668.6-201ENST00000606899 438 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 AC073349.3-201ENST00000617616 186 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 AL513423.1-201ENST00000621695 132 ntBASIC1.19□□□□□ -2.22
HDDC3Q8N4P3 SNORA25-201ENST00000384384 134 ntBASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 MTND4P18-201ENST00000447010 465 ntBASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 RPS27P22-201ENST00000478056 241 ntBASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 AC093303.1-201ENST00000514549 295 ntBASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 RNU6-113P-201ENST00000516653 101 ntBASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 RNU6-273P-201ENST00000516937 96 ntBASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 AC109635.3-201ENST00000529536 185 ntBASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.18□□□□□ -2.22
HDDC3Q8N4P3 MIR5695-201ENST00000579717 85 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms