Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RNU6-595P-201ENST00000363944 107 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 RNU4-38P-201ENST00000364472 129 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 RNU6-1187P-201ENST00000364771 110 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 Y_RNA.450-201ENST00000384198 113 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 RNU6-842P-201ENST00000384269 107 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 RNU6-373P-201ENST00000411247 98 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 SNX2P2-201ENST00000424553 323 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 RNU7-34P-201ENST00000459394 64 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 AL133373.1-201ENST00000497098 94 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 AC108729.3-201ENST00000513484 108 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 AC093303.1-201ENST00000514549 295 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 RNU6-720P-201ENST00000516363 108 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 MIR3664-201ENST00000579074 99 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 AC103810.9-201ENST00000606688 112 ntBASIC1.11□□□□□ -2.23
CCDC65Q8IXS2 Y_RNA.9-201ENST00000362354 101 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 Y_RNA.301-201ENST00000364990 103 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 Y_RNA.405-201ENST00000383979 100 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 Y_RNA.451-201ENST00000384200 100 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 RNU6-793P-201ENST00000384233 104 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 Y_RNA.524-201ENST00000384564 100 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 Y_RNA.561-201ENST00000384694 100 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 MTND4P18-201ENST00000447010 465 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 MTND1P17-201ENST00000448961 204 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 COX6CP14-201ENST00000469580 174 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 RNU7-40P-201ENST00000516397 64 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 RNU6-165P-201ENST00000517170 99 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 SUMO2P16-201ENST00000519475 264 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 AC091144.1-201ENST00000519573 138 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 AC040896.1-201ENST00000613819 479 ntBASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.1□□□□□ -2.23
CCDC65Q8IXS2 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 Y_RNA.3-201ENST00000362331 103 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 RNU6-280P-201ENST00000364145 104 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 RNU6-281P-201ENST00000384212 103 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 RNU6-440P-201ENST00000390882 105 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 USP9YP30-201ENST00000430729 455 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 SNORD65B-201ENST00000459126 73 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 TRMT112P2-201ENST00000512910 132 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 RNU7-99P-201ENST00000516271 62 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 RNU6-566P-201ENST00000516790 107 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 AC134698.4-201ENST00000523451 826 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 AC004584.2-201ENST00000570407 410 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 AC022432.1-201ENST00000595739 310 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 AC012676.2-201ENST00000619258 186 ntBASIC1.09□□□□□ -2.23
CCDC65Q8IXS2 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.09□□□□□ -2.24
CCDC65Q8IXS2 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 Y_RNA.318-201ENST00000365131 97 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 RNA5SP259-201ENST00000365541 109 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 RNU6-1065P-201ENST00000384513 106 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 RNU6-541P-201ENST00000384709 110 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 RNU6-1186P-201ENST00000410429 97 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 MTND3P23-201ENST00000431980 347 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 RPL39P28-201ENST00000465655 155 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 AC005840.1-201ENST00000498412 377 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 RNU6-273P-201ENST00000516937 96 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 AL137100.2-201ENST00000555786 315 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 MIR5695-201ENST00000579717 85 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 ZNF299P-201ENST00000406845 1804 ntBASIC1.08□□□□□ -2.24
CCDC65Q8IXS2 RNU6-222P-201ENST00000362438 107 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 RNU1-22P-201ENST00000363334 158 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 Y_RNA.179-201ENST00000363844 90 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 Y_RNA.338-201ENST00000365320 114 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 Y_RNA.516-201ENST00000384541 124 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 RNU1-139P-201ENST00000391307 165 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 MRPL42P3-201ENST00000401492 326 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 RNU6-321P-201ENST00000410912 106 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 AC245047.3-201ENST00000429428 127 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 SNORD5.1-201ENST00000458800 75 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 RPL39P38-201ENST00000467018 153 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 RNU7-175P-201ENST00000515915 61 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 AL590705.4-201ENST00000532209 134 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 AC100810.6-201ENST00000638068 285 ntBASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC65Q8IXS2 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 Y_RNA.48-201ENST00000362710 103 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 Y_RNA.295-201ENST00000364918 102 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 RNU6-950P-201ENST00000384651 107 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 RN7SKP200-201ENST00000410564 320 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 PGBD4P5-201ENST00000445958 426 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 MIR5701-3-201ENST00000578890 82 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 MIR4273-201ENST00000582824 84 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 MIR5701-1-201ENST00000585138 82 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 AC010999.1-201ENST00000611856 324 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 AC093783.1-201ENST00000612976 329 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 AC090517.2-201ENST00000614966 680 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 MIR5701-2-201ENST00000615634 82 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 AL391516.1-201ENST00000554380 2449 ntBASIC1.06□□□□□ -2.24
CCDC65Q8IXS2 RNA5SP432-201ENST00000362480 116 ntBASIC1.05□□□□□ -2.24
CCDC65Q8IXS2 RNU6-623P-201ENST00000363143 105 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 189.8 ms