Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU6-388P-201ENST00000517012 105 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 RNU6-389P-201ENST00000517048 105 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 HSPE1P18-201ENST00000517602 280 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS53Q5VIR6 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS53Q5VIR6 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS53Q5VIR6 MIR5006-201ENST00000583027 110 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS53Q5VIR6 AL590808.1-201ENST00000618696 141 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.16-201ENST00000362421 102 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.60-201ENST00000362831 98 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 RNU6-727P-201ENST00000363592 107 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.257-201ENST00000364596 102 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 SNORA20.1-201ENST00000364790 130 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 RNU6-1175P-201ENST00000365200 107 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.352-201ENST00000365439 102 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VPS53Q5VIR6 AL033519.2-201ENST00000403958 392 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.597-201ENST00000410463 100 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 RPL23AP36-201ENST00000413895 458 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 Z98742.3-201ENST00000418637 326 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS53Q5VIR6 TRBV12-1-201ENST00000479785 344 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 CYCSP26-201ENST00000534107 320 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 AC018630.3-201ENST00000542637 96 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 AC022441.3-201ENST00000605737 136 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 AC068205.3-201ENST00000636385 468 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.68□□□□□ -1.98
VPS53Q5VIR6 ZNF720P1-201ENST00000562403 1939 ntBASIC2.68□□□□□ -1.98
VPS53Q5VIR6 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS53Q5VIR6 RNU6-326P-201ENST00000365480 107 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 RNU6-1264P-201ENST00000383891 107 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.415-201ENST00000384012 112 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 RNU1-148P-201ENST00000384472 162 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 SNORA53-201ENST00000391141 249 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 RNU4-30P-201ENST00000410245 143 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 AC104435.1-201ENST00000483483 166 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.67□□□□□ -1.98
VPS53Q5VIR6 SERF1AP1-201ENST00000514575 187 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS53Q5VIR6 SNORD14A-201ENST00000606526 91 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 AC245884.12-201ENST00000615364 59 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 AL590240.4-201ENST00000616908 390 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 AC141273.2-201ENST00000618989 130 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 AC008873.1-201ENST00000625051 138 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 AC005336.3-201ENST00000623833 2679 ntBASIC2.67□□□□□ -1.98
VPS53Q5VIR6 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS53Q5VIR6 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.66□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.286-201ENST00000364813 102 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 SNORA72.2-201ENST00000365028 127 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.477-201ENST00000384352 108 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 RNU6-1274P-201ENST00000384557 107 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 SNORD58.1-201ENST00000391313 66 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 RNA5SP504-201ENST00000410676 117 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 NDUFB4P10-201ENST00000452541 359 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 AC005042.3-201ENST00000453230 174 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 HMGB3P17-201ENST00000504195 649 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 PRELID2P1-201ENST00000552837 301 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 AC055872.1-201ENST00000570978 278 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 MIR3126-201ENST00000577443 74 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 AC009831.4-201ENST00000620744 325 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 MIR3674-201ENST00000636576 68 ntBASIC2.66□□□□□ -1.98
VPS53Q5VIR6 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
VPS53Q5VIR6 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.65□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.331-201ENST00000365267 102 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 SNORA25B-201ENST00000365507 128 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 RNU6-301P-201ENST00000384277 107 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 SNORA67.2-201ENST00000384300 149 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 MIR1294-201ENST00000408503 142 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.65□□□□□ -1.99
VPS53Q5VIR6 Y_RNA.673-201ENST00000516306 88 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 RNU2-31P-201ENST00000516954 155 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.65□□□□□ -1.99
VPS53Q5VIR6 U2.14-201ENST00000615943 113 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 AC078938.1-201ENST00000620993 318 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 MIR6873-201ENST00000622788 63 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 AC064859.1-201ENST00000624741 174 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 MIR203B-201ENST00000636080 86 ntBASIC2.65□□□□□ -1.99
VPS53Q5VIR6 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
VPS53Q5VIR6 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
VPS53Q5VIR6 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
VPS53Q5VIR6 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS53Q5VIR6 MIRLET7G-201ENST00000362280 84 ntBASIC2.64□□□□□ -1.99
VPS53Q5VIR6 Y_RNA.136-201ENST00000363444 102 ntBASIC2.64□□□□□ -1.99
VPS53Q5VIR6 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
VPS53Q5VIR6 Y_RNA.569-201ENST00000384749 103 ntBASIC2.64□□□□□ -1.99
VPS53Q5VIR6 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
VPS53Q5VIR6 RNA5SP475-201ENST00000410568 110 ntBASIC2.64□□□□□ -1.99
VPS53Q5VIR6 TOMM22P2-201ENST00000430735 237 ntBASIC2.64□□□□□ -1.99
VPS53Q5VIR6 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS53Q5VIR6 IGLV3-17-201ENST00000519099 244 ntBASIC2.64□□□□□ -1.99
VPS53Q5VIR6 AP002001.1-203ENST00000534002 267 ntBASIC2.64□□□□□ -1.99
VPS53Q5VIR6 AC121758.2-201ENST00000553271 193 ntBASIC2.64□□□□□ -1.99
VPS53Q5VIR6 AC008749.1-201ENST00000597650 306 ntBASIC2.64□□□□□ -1.99
VPS53Q5VIR6 AC037487.3-201ENST00000606668 112 ntBASIC2.64□□□□□ -1.99
VPS53Q5VIR6 BX284668.6-201ENST00000606899 438 ntBASIC2.64□□□□□ -1.99
VPS53Q5VIR6 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS53Q5VIR6 AC004467.1-201ENST00000615678 330 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms