Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD3Q12873 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD3Q12873 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD3Q12873 MTCO3P10-201ENST00000455912 772 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 AC010469.2-201ENST00000496412 480 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 Y_RNA.672-201ENST00000516289 104 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 Vault.3-201ENST00000516676 95 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 MIR4493-201ENST00000584016 73 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 MIR3192-201ENST00000584920 77 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 AC006927.3-201ENST00000638789 384 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 AP000568.1-201ENST00000282964 442 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 MIR18A-201ENST00000362310 71 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 SNORD114-16-201ENST00000363044 70 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 RNU6-1305P-201ENST00000364353 104 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 Y_RNA.598-201ENST00000410480 95 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 AL162725.1-201ENST00000435405 301 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.04□□□□□ -2.4
CHD3Q12873 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.04□□□□□ -2.4
CHD3Q12873 RNU7-12P-201ENST00000516030 62 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 RNU6-1291P-201ENST00000516591 104 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 AC104576.1-201ENST00000524225 88 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 AC022523.2-201ENST00000561045 150 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 BNIP3P39-201ENST00000601077 554 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 AC091805.2-201ENST00000603848 235 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 AC017083.3-201ENST00000609955 700 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 AP000720.1-201ENST00000625091 483 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.04□□□□□ -2.4
CHD3Q12873 RNU6-227P-201ENST00000362865 103 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 SNORD44.1-201ENST00000363202 61 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 RNA5SP214-201ENST00000363378 118 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 RNU6-501P-201ENST00000364072 100 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 SNORA36A-201ENST00000384221 132 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 RNU6-784P-201ENST00000384330 106 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 RNU6-30P-201ENST00000384561 107 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 MIR520F-201ENST00000384824 87 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 MIR520C-201ENST00000385005 87 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 SNORD65B-201ENST00000459126 73 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC0.03□□□□□ -2.4
CHD3Q12873 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC0.03□□□□□ -2.4
CHD3Q12873 AC116562.3-201ENST00000506136 177 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 AP003716.2-201ENST00000528260 108 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 AC068587.5-201ENST00000528506 175 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.03□□□□□ -2.4
CHD3Q12873 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.03□□□□□ -2.4
CHD3Q12873 AC073349.3-201ENST00000617616 186 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 AC009161.2-201ENST00000624626 138 ntBASIC0.03□□□□□ -2.4
CHD3Q12873 MIR411-201ENST00000362239 96 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 SNORA1B-201ENST00000362535 133 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 SNORD114-9-201ENST00000364370 72 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 RNU4-45P-201ENST00000365469 141 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 SNORA8.3-201ENST00000384679 139 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 SNORD70.1-201ENST00000391007 85 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 RNU6-195P-201ENST00000411352 109 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 PDCL2P1-201ENST00000419302 352 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.03□□□□□ -2.41
CHD3Q12873 SNRPGP12-201ENST00000449481 213 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 AC091874.1-201ENST00000511402 339 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 RNU7-99P-201ENST00000516271 62 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 MTND2P32-201ENST00000521584 1038 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC0.03□□□□□ -2.41
CHD3Q12873 MIR4768-201ENST00000585270 74 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 AC108676.2-201ENST00000605225 163 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 SNORA28-201ENST00000606769 126 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC0.03□□□□□ -2.41
CHD3Q12873 MTND4P9-201ENST00000507819 1346 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 MTND5P16-201ENST00000460269 1703 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 RNA5SP264-201ENST00000363115 107 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 SNORD95.1-201ENST00000364099 68 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 RNU6-1297P-201ENST00000384415 104 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 SNORD41-201ENST00000386967 70 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 RNA5SP219-201ENST00000390940 113 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 RNU6-903P-201ENST00000391270 109 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0.02□□□□□ -2.41
CHD3Q12873 AC016909.1-201ENST00000415916 166 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.02□□□□□ -2.41
CHD3Q12873 AC009961.2-201ENST00000435771 251 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 DAP3P1-201ENST00000441522 278 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 AC112204.1-201ENST00000502591 103 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 AC022493.2-201ENST00000506122 481 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 RNU6-1198P-201ENST00000516904 67 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 AL157687.1-201ENST00000554853 619 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 MIR4999-201ENST00000585029 91 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 AL157392.4-201ENST00000609756 345 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 U2.17-201ENST00000611454 95 ntBASIC0.02□□□□□ -2.41
CHD3Q12873 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.02□□□□□ -2.41
CHD3Q12873 RNU6-369P-201ENST00000362515 102 ntBASIC0.01□□□□□ -2.41
CHD3Q12873 RNU6-1097P-201ENST00000363586 107 ntBASIC0.01□□□□□ -2.41
CHD3Q12873 RNU6-1127P-201ENST00000384580 107 ntBASIC0.01□□□□□ -2.41
CHD3Q12873 RNU6-1093P-201ENST00000391194 107 ntBASIC0.01□□□□□ -2.41
CHD3Q12873 RNU6-757P-201ENST00000410334 100 ntBASIC0.01□□□□□ -2.41
CHD3Q12873 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC0.01□□□□□ -2.41
CHD3Q12873 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.01□□□□□ -2.41
CHD3Q12873 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.01□□□□□ -2.41
CHD3Q12873 RNU6-1220P-201ENST00000517126 108 ntBASIC0.01□□□□□ -2.41
CHD3Q12873 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.01□□□□□ -2.41
CHD3Q12873 AL121992.2-201ENST00000606262 256 ntBASIC0.01□□□□□ -2.41
CHD3Q12873 AL133173.2-201ENST00000614270 90 ntBASIC0.01□□□□□ -2.41
CHD3Q12873 MIR7844-201ENST00000616161 122 ntBASIC0.01□□□□□ -2.41
CHD3Q12873 RNU6-181P-201ENST00000363225 107 ntBASIC0.01□□□□□ -2.41
CHD3Q12873 SNORA20.2-201ENST00000383922 131 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms