Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 RNU5E-9P-201ENST00000411164 104 ntBASIC2.4□□□□□ -2.03
TTC3P53804 AC019205.3-201ENST00000424573 156 ntBASIC2.4□□□□□ -2.03
TTC3P53804 UQCRBP2-201ENST00000447827 297 ntBASIC2.4□□□□□ -2.03
TTC3P53804 AL031183.1-201ENST00000457667 207 ntBASIC2.4□□□□□ -2.03
TTC3P53804 RNU6-1212P-201ENST00000517023 104 ntBASIC2.4□□□□□ -2.03
TTC3P53804 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.4□□□□□ -2.03
TTC3P53804 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.4□□□□□ -2.03
TTC3P53804 PCGEM1.1-201ENST00000613431 131 ntBASIC2.4□□□□□ -2.03
TTC3P53804 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.4□□□□□ -2.03
TTC3P53804 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
TTC3P53804 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.4□□□□□ -2.03
TTC3P53804 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.39□□□□□ -2.03
TTC3P53804 RNU1-62P-201ENST00000362599 164 ntBASIC2.39□□□□□ -2.03
TTC3P53804 Y_RNA.101-201ENST00000363154 102 ntBASIC2.39□□□□□ -2.03
TTC3P53804 AC004866.1-201ENST00000411748 78 ntBASIC2.39□□□□□ -2.03
TTC3P53804 AC024067.1-201ENST00000426199 223 ntBASIC2.39□□□□□ -2.03
TTC3P53804 AC009237.7-201ENST00000447357 229 ntBASIC2.39□□□□□ -2.03
TTC3P53804 RNU7-23P-201ENST00000459465 62 ntBASIC2.39□□□□□ -2.03
TTC3P53804 AP001324.2-201ENST00000461163 319 ntBASIC2.39□□□□□ -2.03
TTC3P53804 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.39□□□□□ -2.03
TTC3P53804 SNORD59.2-201ENST00000516873 68 ntBASIC2.39□□□□□ -2.03
TTC3P53804 SCARNA3-201ENST00000517097 143 ntBASIC2.39□□□□□ -2.03
TTC3P53804 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.39□□□□□ -2.03
TTC3P53804 AC004467.1-201ENST00000615678 330 ntBASIC2.39□□□□□ -2.03
TTC3P53804 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
TTC3P53804 SNORD21-201ENST00000383953 95 ntBASIC2.39□□□□□ -2.03
TTC3P53804 RNU6-750P-201ENST00000390946 107 ntBASIC2.39□□□□□ -2.03
TTC3P53804 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.39□□□□□ -2.03
TTC3P53804 RPL19P1-201ENST00000411635 428 ntBASIC2.39□□□□□ -2.03
TTC3P53804 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.39□□□□□ -2.03
TTC3P53804 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.39□□□□□ -2.03
TTC3P53804 RPS15AP28-201ENST00000435088 386 ntBASIC2.39□□□□□ -2.03
TTC3P53804 CR769767.1-201ENST00000436337 346 ntBASIC2.39□□□□□ -2.03
TTC3P53804 HMGN2P23-201ENST00000456759 269 ntBASIC2.39□□□□□ -2.03
TTC3P53804 RNU6-1278P-201ENST00000516130 107 ntBASIC2.39□□□□□ -2.03
TTC3P53804 RNU6-966P-201ENST00000516479 104 ntBASIC2.39□□□□□ -2.03
TTC3P53804 SNORA81.3-201ENST00000517283 198 ntBASIC2.39□□□□□ -2.03
TTC3P53804 AL137100.2-201ENST00000555786 315 ntBASIC2.39□□□□□ -2.03
TTC3P53804 RPL21P9-201ENST00000556149 474 ntBASIC2.39□□□□□ -2.03
TTC3P53804 AC015712.3-201ENST00000559380 164 ntBASIC2.39□□□□□ -2.03
TTC3P53804 MIR5692C2-201ENST00000577959 77 ntBASIC2.39□□□□□ -2.03
TTC3P53804 MIR3145-201ENST00000580727 82 ntBASIC2.39□□□□□ -2.03
TTC3P53804 AL034555.1-201ENST00000604816 211 ntBASIC2.39□□□□□ -2.03
TTC3P53804 AC072026.1-201ENST00000605023 201 ntBASIC2.39□□□□□ -2.03
TTC3P53804 AL590240.4-201ENST00000616908 390 ntBASIC2.39□□□□□ -2.03
TTC3P53804 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
TTC3P53804 Y_RNA.40-201ENST00000362645 93 ntBASIC2.38□□□□□ -2.03
TTC3P53804 SNORA46.1-201ENST00000391069 153 ntBASIC2.38□□□□□ -2.03
TTC3P53804 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.38□□□□□ -2.03
TTC3P53804 MRPS18CP4-201ENST00000535821 231 ntBASIC2.38□□□□□ -2.03
TTC3P53804 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.38□□□□□ -2.03
TTC3P53804 AC068205.3-201ENST00000636385 468 ntBASIC2.38□□□□□ -2.03
TTC3P53804 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
TTC3P53804 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
TTC3P53804 RNU4-15P-201ENST00000362613 141 ntBASIC2.37□□□□□ -2.03
TTC3P53804 RNU6-793P-201ENST00000384233 104 ntBASIC2.37□□□□□ -2.03
TTC3P53804 MIR221-201ENST00000385135 110 ntBASIC2.37□□□□□ -2.03
TTC3P53804 AL139156.1-201ENST00000412785 841 ntBASIC2.37□□□□□ -2.03
TTC3P53804 snoU13.6-201ENST00000458785 104 ntBASIC2.37□□□□□ -2.03
TTC3P53804 RNA5SP200-201ENST00000516360 103 ntBASIC2.37□□□□□ -2.03
TTC3P53804 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.37□□□□□ -2.03
TTC3P53804 EIF4A1P12-201ENST00000551910 141 ntBASIC2.37□□□□□ -2.03
TTC3P53804 MIR3910-1-201ENST00000580936 111 ntBASIC2.37□□□□□ -2.03
TTC3P53804 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.37□□□□□ -2.03
TTC3P53804 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
TTC3P53804 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.37□□□□□ -2.03
TTC3P53804 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.37□□□□□ -2.03
TTC3P53804 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.37□□□□□ -2.03
TTC3P53804 RNY1-201ENST00000364228 113 ntBASIC2.37□□□□□ -2.03
TTC3P53804 RNU6-326P-201ENST00000365480 107 ntBASIC2.37□□□□□ -2.03
TTC3P53804 Y_RNA.368-201ENST00000365547 113 ntBASIC2.37□□□□□ -2.03
TTC3P53804 RNU6-47P-201ENST00000383866 107 ntBASIC2.37□□□□□ -2.03
TTC3P53804 RNU6-926P-201ENST00000384075 107 ntBASIC2.37□□□□□ -2.03
TTC3P53804 RNU6-746P-201ENST00000384112 109 ntBASIC2.37□□□□□ -2.03
TTC3P53804 RNU6-1310P-201ENST00000384153 107 ntBASIC2.37□□□□□ -2.03
TTC3P53804 MIR548I2-201ENST00000408348 149 ntBASIC2.37□□□□□ -2.03
TTC3P53804 BTF3P11-201ENST00000426582 477 ntBASIC2.37□□□□□ -2.03
TTC3P53804 AC092427.1-202ENST00000430569 476 ntBASIC2.37□□□□□ -2.03
TTC3P53804 AL392103.1-201ENST00000447000 198 ntBASIC2.37□□□□□ -2.03
TTC3P53804 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.36□□□□□ -2.03
TTC3P53804 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
TTC3P53804 RNU6-1266P-201ENST00000362794 105 ntBASIC2.36□□□□□ -2.03
TTC3P53804 Y_RNA.329-201ENST00000365209 107 ntBASIC2.36□□□□□ -2.03
TTC3P53804 SNORA67.2-201ENST00000384300 149 ntBASIC2.36□□□□□ -2.03
TTC3P53804 RNU6-482P-201ENST00000391068 107 ntBASIC2.36□□□□□ -2.03
TTC3P53804 SNORA48.3-201ENST00000391081 134 ntBASIC2.36□□□□□ -2.03
TTC3P53804 RNU6-1248P-201ENST00000391096 64 ntBASIC2.36□□□□□ -2.03
TTC3P53804 RPL23AP70-201ENST00000483361 460 ntBASIC2.36□□□□□ -2.03
TTC3P53804 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
TTC3P53804 SCARNA16.3-201ENST00000516595 184 ntBASIC2.36□□□□□ -2.03
TTC3P53804 AC108706.1-201ENST00000611053 297 ntBASIC2.36□□□□□ -2.03
TTC3P53804 AC013791.1-201ENST00000616619 62 ntBASIC2.36□□□□□ -2.03
TTC3P53804 AC073349.3-201ENST00000617616 186 ntBASIC2.36□□□□□ -2.03
TTC3P53804 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
TTC3P53804 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
TTC3P53804 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
TTC3P53804 Y_RNA.286-201ENST00000364813 102 ntBASIC2.35□□□□□ -2.03
TTC3P53804 DEFA7P-201ENST00000382676 285 ntBASIC2.35□□□□□ -2.03
TTC3P53804 AC074198.2-201ENST00000508153 258 ntBASIC2.35□□□□□ -2.03
TTC3P53804 AC022559.1-201ENST00000520905 205 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms