Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.78□□□□□ -2.12
LIMK1P53667 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.78□□□□□ -2.12
LIMK1P53667 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
LIMK1P53667 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.13
LIMK1P53667 MTND5P35-201ENST00000557537 1720 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.77□□□□□ -2.13
LIMK1P53667 U3.8-201ENST00000363675 217 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 SNORD48-201ENST00000364953 64 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 Y_RNA.384-201ENST00000383909 102 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 AC008134.1-201ENST00000420943 193 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 UBE2V1P7-201ENST00000446395 340 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 HMGN1P13-201ENST00000505795 138 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 Y_RNA.683-201ENST00000516508 93 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 AC022868.1-201ENST00000517767 391 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 AC105029.1-201ENST00000520250 669 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 SUB1P4-201ENST00000566062 339 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 AC004584.2-201ENST00000570407 410 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 MIR3122-201ENST00000577243 73 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 MIR4801-201ENST00000582704 82 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 AC016925.2-201ENST00000605108 242 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 MIR8081-201ENST00000611533 95 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.77□□□□□ -2.13
LIMK1P53667 AC022513.1-201ENST00000624512 117 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 AC008873.1-201ENST00000625051 138 ntBASIC1.77□□□□□ -2.13
LIMK1P53667 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.76□□□□□ -2.13
LIMK1P53667 RNU6-1266P-201ENST00000362794 105 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 Y_RNA.191-201ENST00000363972 113 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 RNU6-99P-201ENST00000364721 107 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 Y_RNA.358-201ENST00000365491 99 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 RNU6-42P-201ENST00000384165 107 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 RNU6-281P-201ENST00000384212 103 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 RNU6-417P-201ENST00000384712 107 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 MIR613-201ENST00000385248 95 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.76□□□□□ -2.13
LIMK1P53667 AC099677.2-201ENST00000436385 175 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 AC093019.1-201ENST00000443135 252 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 MIR2053-201ENST00000459295 91 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 RNA5SP480-201ENST00000516840 109 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.76□□□□□ -2.13
LIMK1P53667 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.76□□□□□ -2.13
LIMK1P53667 MIR1244-1-201ENST00000612829 85 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.76□□□□□ -2.13
LIMK1P53667 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.76□□□□□ -2.13
LIMK1P53667 MIR1244-3-201ENST00000635744 85 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 MIR1244-2-201ENST00000636449 85 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 MIR1244-4-202ENST00000636813 85 ntBASIC1.76□□□□□ -2.13
LIMK1P53667 AC010615.1-201ENST00000594254 1764 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
LIMK1P53667 MIR424-201ENST00000362227 98 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 RNU6-1019P-201ENST00000364424 107 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 RNU6-1240P-201ENST00000365155 104 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 Y_RNA.557-201ENST00000384680 107 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 MIR520A-201ENST00000384862 85 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 RNA5SP323-201ENST00000391094 133 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 RNU1-139P-201ENST00000391307 165 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 RPL21P1-201ENST00000399532 476 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 RNA5SP504-201ENST00000410676 117 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.75□□□□□ -2.13
LIMK1P53667 MTND4P18-201ENST00000447010 465 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 Y_RNA.653-201ENST00000459091 95 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 AC010409.1-201ENST00000487382 476 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 RPS29P11-201ENST00000496507 171 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 SNORA31.17-201ENST00000516953 127 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.75□□□□□ -2.13
LIMK1P53667 MIR8074-201ENST00000615081 81 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 AC133104.2-201ENST00000615272 193 ntBASIC1.75□□□□□ -2.13
LIMK1P53667 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
LIMK1P53667 snoU2-30.2-201ENST00000362805 70 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 RNU6-112P-201ENST00000363599 104 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 RNU6-1188P-201ENST00000363795 107 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.74□□□□□ -2.13
LIMK1P53667 RNU6-310P-201ENST00000384655 107 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 Y_RNA.646-201ENST00000410980 101 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 AC114482.1-201ENST00000418010 247 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 CST2P1-201ENST00000425770 87 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.74□□□□□ -2.13
LIMK1P53667 AC009474.2-201ENST00000451383 136 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.74□□□□□ -2.13
LIMK1P53667 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.74□□□□□ -2.13
LIMK1P53667 RNU6-221P-201ENST00000459541 99 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 AC025647.1-201ENST00000517879 253 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 APOOP3-201ENST00000536787 586 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 AC084364.2-201ENST00000546924 395 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.74□□□□□ -2.13
LIMK1P53667 FRG2DP-202ENST00000566967 323 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 SNRPGP19-201ENST00000603826 189 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 MIR338-201ENST00000636369 67 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.74□□□□□ -2.13
LIMK1P53667 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
LIMK1P53667 Y_RNA.259-201ENST00000364619 101 ntBASIC1.73□□□□□ -2.13
LIMK1P53667 RNU6-338P-201ENST00000383888 105 ntBASIC1.73□□□□□ -2.13
LIMK1P53667 Y_RNA.387-201ENST00000383918 102 ntBASIC1.73□□□□□ -2.13
LIMK1P53667 RNU6-1297P-201ENST00000384415 104 ntBASIC1.73□□□□□ -2.13
LIMK1P53667 MIR1185-2-201ENST00000408687 86 ntBASIC1.73□□□□□ -2.13
LIMK1P53667 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.73□□□□□ -2.13
LIMK1P53667 UQCRBP2-201ENST00000447827 297 ntBASIC1.73□□□□□ -2.13
LIMK1P53667 AC022493.2-201ENST00000506122 481 ntBASIC1.73□□□□□ -2.13
LIMK1P53667 AC025465.3-201ENST00000510570 311 ntBASIC1.73□□□□□ -2.13
LIMK1P53667 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.73□□□□□ -2.13
LIMK1P53667 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms