Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.16□□□□□ -2.22
MSH6P52701 AC027119.1-201ENST00000440877 241 ntBASIC1.16□□□□□ -2.22
MSH6P52701 AC074290.1-201ENST00000448883 135 ntBASIC1.16□□□□□ -2.22
MSH6P52701 snoU13.27-201ENST00000459278 104 ntBASIC1.16□□□□□ -2.22
MSH6P52701 RNU6-256P-201ENST00000516747 97 ntBASIC1.16□□□□□ -2.22
MSH6P52701 RNU6-1198P-201ENST00000516904 67 ntBASIC1.16□□□□□ -2.22
MSH6P52701 RNU6-58P-201ENST00000517143 103 ntBASIC1.16□□□□□ -2.22
MSH6P52701 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.16□□□□□ -2.22
MSH6P52701 AC245505.1-201ENST00000556398 224 ntBASIC1.16□□□□□ -2.22
MSH6P52701 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.16□□□□□ -2.22
MSH6P52701 AC015688.6-201ENST00000577737 104 ntBASIC1.16□□□□□ -2.22
MSH6P52701 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.16□□□□□ -2.22
MSH6P52701 AC006504.8-201ENST00000621046 635 ntBASIC1.16□□□□□ -2.22
MSH6P52701 MIR8063-201ENST00000621930 81 ntBASIC1.16□□□□□ -2.22
MSH6P52701 AC091925.1-201ENST00000623204 462 ntBASIC1.16□□□□□ -2.22
MSH6P52701 AC008873.1-201ENST00000625051 138 ntBASIC1.16□□□□□ -2.22
MSH6P52701 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.15□□□□□ -2.22
MSH6P52701 Y_RNA.135-201ENST00000363439 95 ntBASIC1.15□□□□□ -2.23
MSH6P52701 SNORA33-201ENST00000363664 130 ntBASIC1.15□□□□□ -2.23
MSH6P52701 SNORD115-32-201ENST00000364079 82 ntBASIC1.15□□□□□ -2.23
MSH6P52701 SNORA72.2-201ENST00000365028 127 ntBASIC1.15□□□□□ -2.23
MSH6P52701 RNU6-417P-201ENST00000384712 107 ntBASIC1.15□□□□□ -2.23
MSH6P52701 MIR515-2-201ENST00000384883 83 ntBASIC1.15□□□□□ -2.23
MSH6P52701 MIR515-1-201ENST00000384884 83 ntBASIC1.15□□□□□ -2.23
MSH6P52701 RNA5SP504-201ENST00000410676 117 ntBASIC1.15□□□□□ -2.23
MSH6P52701 DLGAP5P1-201ENST00000430307 464 ntBASIC1.15□□□□□ -2.23
MSH6P52701 Z82188.1-201ENST00000436709 154 ntBASIC1.15□□□□□ -2.23
MSH6P52701 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.15□□□□□ -2.23
MSH6P52701 RNU6-221P-201ENST00000459541 99 ntBASIC1.15□□□□□ -2.23
MSH6P52701 AC079140.2-201ENST00000506193 142 ntBASIC1.15□□□□□ -2.23
MSH6P52701 RNU6-314P-201ENST00000516574 104 ntBASIC1.15□□□□□ -2.23
MSH6P52701 AC025647.1-201ENST00000517879 253 ntBASIC1.15□□□□□ -2.23
MSH6P52701 MTND1P5-201ENST00000517906 940 ntBASIC1.15□□□□□ -2.23
MSH6P52701 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.15□□□□□ -2.23
MSH6P52701 MIR4742-201ENST00000581069 85 ntBASIC1.15□□□□□ -2.23
MSH6P52701 AL078596.1-201ENST00000624856 447 ntBASIC1.15□□□□□ -2.23
MSH6P52701 snoZ196.1-201ENST00000625269 89 ntBASIC1.15□□□□□ -2.23
MSH6P52701 AC024614.3-201ENST00000637860 256 ntBASIC1.15□□□□□ -2.23
MSH6P52701 SNORD33-201ENST00000362761 85 ntBASIC1.14□□□□□ -2.23
MSH6P52701 RNU6-137P-201ENST00000363680 108 ntBASIC1.14□□□□□ -2.23
MSH6P52701 RNU4-75P-201ENST00000364621 146 ntBASIC1.14□□□□□ -2.23
MSH6P52701 RNU6-534P-201ENST00000364877 106 ntBASIC1.14□□□□□ -2.23
MSH6P52701 MIR32-201ENST00000384965 70 ntBASIC1.14□□□□□ -2.23
MSH6P52701 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
MSH6P52701 RNU6-57P-201ENST00000411348 103 ntBASIC1.14□□□□□ -2.23
MSH6P52701 AL358176.2-201ENST00000425769 204 ntBASIC1.14□□□□□ -2.23
MSH6P52701 MTCO2P7-201ENST00000446518 666 ntBASIC1.14□□□□□ -2.23
MSH6P52701 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.14□□□□□ -2.23
MSH6P52701 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.14□□□□□ -2.23
MSH6P52701 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.14□□□□□ -2.23
MSH6P52701 AC024995.1-201ENST00000523014 93 ntBASIC1.14□□□□□ -2.23
MSH6P52701 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.14□□□□□ -2.23
MSH6P52701 MIR5696-201ENST00000578474 85 ntBASIC1.14□□□□□ -2.23
MSH6P52701 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.14□□□□□ -2.23
MSH6P52701 POLR3GP2-201ENST00000588366 668 ntBASIC1.14□□□□□ -2.23
MSH6P52701 AL512605.2-201ENST00000592972 256 ntBASIC1.14□□□□□ -2.23
MSH6P52701 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.14□□□□□ -2.23
MSH6P52701 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.14□□□□□ -2.23
MSH6P52701 AC006001.4-201ENST00000622243 395 ntBASIC1.14□□□□□ -2.23
MSH6P52701 Y_RNA.100-201ENST00000363141 102 ntBASIC1.13□□□□□ -2.23
MSH6P52701 SNORA4.2-201ENST00000365313 147 ntBASIC1.13□□□□□ -2.23
MSH6P52701 SNORD116-11-201ENST00000383882 92 ntBASIC1.13□□□□□ -2.23
MSH6P52701 MIR517A-201ENST00000385001 87 ntBASIC1.13□□□□□ -2.23
MSH6P52701 MIR181A1-201ENST00000385026 110 ntBASIC1.13□□□□□ -2.23
MSH6P52701 RNA5SP467-201ENST00000391274 118 ntBASIC1.13□□□□□ -2.23
MSH6P52701 RNA5SP193-201ENST00000410353 107 ntBASIC1.13□□□□□ -2.23
MSH6P52701 AC016909.1-201ENST00000415916 166 ntBASIC1.13□□□□□ -2.23
MSH6P52701 RPS27P16-201ENST00000425758 201 ntBASIC1.13□□□□□ -2.23
MSH6P52701 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.13□□□□□ -2.23
MSH6P52701 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.13□□□□□ -2.23
MSH6P52701 DAP3P1-201ENST00000441522 278 ntBASIC1.13□□□□□ -2.23
MSH6P52701 AL163195.1-201ENST00000496941 348 ntBASIC1.13□□□□□ -2.23
MSH6P52701 RNA5SP476-201ENST00000516613 103 ntBASIC1.13□□□□□ -2.23
MSH6P52701 AC005668.1-201ENST00000571142 476 ntBASIC1.13□□□□□ -2.23
MSH6P52701 MIR4711-201ENST00000578274 70 ntBASIC1.13□□□□□ -2.23
MSH6P52701 AC019193.3-201ENST00000609144 554 ntBASIC1.13□□□□□ -2.23
MSH6P52701 AL121890.5-201ENST00000620848 304 ntBASIC1.13□□□□□ -2.23
MSH6P52701 RNU6-1090P-201ENST00000364065 94 ntBASIC1.12□□□□□ -2.23
MSH6P52701 Y_RNA.212-201ENST00000364177 102 ntBASIC1.12□□□□□ -2.23
MSH6P52701 RNU6-1240P-201ENST00000365155 104 ntBASIC1.12□□□□□ -2.23
MSH6P52701 Y_RNA.414-201ENST00000384011 101 ntBASIC1.12□□□□□ -2.23
MSH6P52701 MIR508-201ENST00000384857 115 ntBASIC1.12□□□□□ -2.23
MSH6P52701 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
MSH6P52701 MIR1253-201ENST00000408273 105 ntBASIC1.12□□□□□ -2.23
MSH6P52701 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.12□□□□□ -2.23
MSH6P52701 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.12□□□□□ -2.23
MSH6P52701 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.12□□□□□ -2.23
MSH6P52701 AC105313.1-201ENST00000509121 353 ntBASIC1.12□□□□□ -2.23
MSH6P52701 SNORA25.14-201ENST00000516481 132 ntBASIC1.12□□□□□ -2.23
MSH6P52701 AL442163.3-201ENST00000554110 156 ntBASIC1.12□□□□□ -2.23
MSH6P52701 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.12□□□□□ -2.23
MSH6P52701 AC080013.6-201ENST00000606185 215 ntBASIC1.12□□□□□ -2.23
MSH6P52701 SNORD11B-201ENST00000607707 90 ntBASIC1.12□□□□□ -2.23
MSH6P52701 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.12□□□□□ -2.23
MSH6P52701 U6.108-201ENST00000637764 58 ntBASIC1.12□□□□□ -2.23
MSH6P52701 RNY4P14-201ENST00000363656 96 ntBASIC1.11□□□□□ -2.23
MSH6P52701 Y_RNA.402-201ENST00000383972 102 ntBASIC1.11□□□□□ -2.23
MSH6P52701 RNU6-331P-201ENST00000384724 107 ntBASIC1.11□□□□□ -2.23
MSH6P52701 MIR153-2-201ENST00000385225 87 ntBASIC1.11□□□□□ -2.23
MSH6P52701 RNA5SP127-201ENST00000411051 133 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms