Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.34□□□□□ -1.88
LIG3P49916 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
LIG3P49916 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
LIG3P49916 U8.7-201ENST00000364940 136 ntBASIC3.33□□□□□ -1.88
LIG3P49916 SNORD116-13-201ENST00000384408 92 ntBASIC3.33□□□□□ -1.88
LIG3P49916 MIR616-201ENST00000385293 97 ntBASIC3.33□□□□□ -1.88
LIG3P49916 RN7SL807P-201ENST00000470923 297 ntBASIC3.33□□□□□ -1.88
LIG3P49916 AC010409.1-201ENST00000487382 476 ntBASIC3.33□□□□□ -1.88
LIG3P49916 RPL36AP21-201ENST00000490372 323 ntBASIC3.33□□□□□ -1.88
LIG3P49916 AC117454.1-201ENST00000491120 168 ntBASIC3.33□□□□□ -1.88
LIG3P49916 RNA5SP20-201ENST00000515976 84 ntBASIC3.33□□□□□ -1.88
LIG3P49916 RNU6-1007P-201ENST00000516586 107 ntBASIC3.33□□□□□ -1.88
LIG3P49916 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.33□□□□□ -1.88
LIG3P49916 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.33□□□□□ -1.88
LIG3P49916 AL356280.1-201ENST00000603614 379 ntBASIC3.33□□□□□ -1.88
LIG3P49916 AL391903.3-201ENST00000612158 163 ntBASIC3.33□□□□□ -1.88
LIG3P49916 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.32□□□□□ -1.88
LIG3P49916 RNU6-743P-201ENST00000364151 106 ntBASIC3.32□□□□□ -1.88
LIG3P49916 RNU6-1240P-201ENST00000365155 104 ntBASIC3.32□□□□□ -1.88
LIG3P49916 Y_RNA.572-201ENST00000384757 98 ntBASIC3.32□□□□□ -1.88
LIG3P49916 CR769767.1-201ENST00000436337 346 ntBASIC3.32□□□□□ -1.88
LIG3P49916 MIR4431-201ENST00000579990 94 ntBASIC3.32□□□□□ -1.88
LIG3P49916 AL161756.2-201ENST00000604597 246 ntBASIC3.32□□□□□ -1.88
LIG3P49916 MIR7112-201ENST00000616126 65 ntBASIC3.32□□□□□ -1.88
LIG3P49916 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
LIG3P49916 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.32□□□□□ -1.88
LIG3P49916 AC017071.1-201ENST00000564407 2204 ntBASIC3.32□□□□□ -1.88
LIG3P49916 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LIG3P49916 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIG3P49916 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIG3P49916 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIG3P49916 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.31□□□□□ -1.88
LIG3P49916 AC108206.1-201ENST00000570186 4159 ntBASIC3.31□□□□□ -1.88
LIG3P49916 RNU1-23P-201ENST00000363361 144 ntBASIC3.31□□□□□ -1.88
LIG3P49916 RNU6-1323P-201ENST00000384025 107 ntBASIC3.31□□□□□ -1.88
LIG3P49916 RNU6-239P-201ENST00000390990 99 ntBASIC3.31□□□□□ -1.88
LIG3P49916 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.31□□□□□ -1.88
LIG3P49916 AL137159.1-201ENST00000452808 512 ntBASIC3.31□□□□□ -1.88
LIG3P49916 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.31□□□□□ -1.88
LIG3P49916 RNU7-116P-201ENST00000516940 62 ntBASIC3.31□□□□□ -1.88
LIG3P49916 SNORA70.24-201ENST00000517233 118 ntBASIC3.31□□□□□ -1.88
LIG3P49916 AC007536.1-201ENST00000533382 349 ntBASIC3.31□□□□□ -1.88
LIG3P49916 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.31□□□□□ -1.88
LIG3P49916 MIR5195-201ENST00000583555 115 ntBASIC3.31□□□□□ -1.88
LIG3P49916 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.31□□□□□ -1.88
LIG3P49916 AP003357.1-201ENST00000604497 148 ntBASIC3.31□□□□□ -1.88
LIG3P49916 AC090115.4-201ENST00000609970 188 ntBASIC3.31□□□□□ -1.88
LIG3P49916 MIR6733-201ENST00000635723 61 ntBASIC3.31□□□□□ -1.88
LIG3P49916 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
LIG3P49916 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LIG3P49916 AL356292.1-201ENST00000283110 373 ntBASIC3.3□□□□□ -1.88
LIG3P49916 SNORA36B-201ENST00000410438 131 ntBASIC3.3□□□□□ -1.88
LIG3P49916 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.3□□□□□ -1.88
LIG3P49916 AL357134.1-201ENST00000445848 426 ntBASIC3.3□□□□□ -1.88
LIG3P49916 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.3□□□□□ -1.88
LIG3P49916 AC245047.8-201ENST00000456455 284 ntBASIC3.3□□□□□ -1.88
LIG3P49916 AC010531.2-201ENST00000465012 153 ntBASIC3.3□□□□□ -1.88
LIG3P49916 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.3□□□□□ -1.88
LIG3P49916 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.3□□□□□ -1.88
LIG3P49916 RNA5SP76-201ENST00000516277 87 ntBASIC3.3□□□□□ -1.88
LIG3P49916 AC109810.1-201ENST00000534066 224 ntBASIC3.3□□□□□ -1.88
LIG3P49916 AC127455.1-201ENST00000565496 145 ntBASIC3.3□□□□□ -1.88
LIG3P49916 MIR5680-201ENST00000577577 84 ntBASIC3.3□□□□□ -1.88
LIG3P49916 AC005972.2-201ENST00000604690 348 ntBASIC3.3□□□□□ -1.88
LIG3P49916 MIR3651-201ENST00000630427 90 ntBASIC3.3□□□□□ -1.88
LIG3P49916 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LIG3P49916 RNU1-70P-201ENST00000362618 164 ntBASIC3.29□□□□□ -1.88
LIG3P49916 SNORA38.1-201ENST00000364172 131 ntBASIC3.29□□□□□ -1.88
LIG3P49916 Y_RNA.343-201ENST00000365354 112 ntBASIC3.29□□□□□ -1.88
LIG3P49916 U8.9-201ENST00000365667 134 ntBASIC3.29□□□□□ -1.88
LIG3P49916 Y_RNA.400-201ENST00000383963 111 ntBASIC3.29□□□□□ -1.88
LIG3P49916 AL031121.1-201ENST00000406553 254 ntBASIC3.29□□□□□ -1.88
LIG3P49916 MIR1289-1-201ENST00000408836 144 ntBASIC3.29□□□□□ -1.88
LIG3P49916 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.29□□□□□ -1.88
LIG3P49916 RN7SL499P-201ENST00000481141 276 ntBASIC3.29□□□□□ -1.88
LIG3P49916 AC006483.1-201ENST00000487308 313 ntBASIC3.29□□□□□ -1.88
LIG3P49916 AC107027.2-201ENST00000512197 115 ntBASIC3.29□□□□□ -1.88
LIG3P49916 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC3.29□□□□□ -1.88
LIG3P49916 PRELID2P1-201ENST00000552837 301 ntBASIC3.29□□□□□ -1.88
LIG3P49916 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.29□□□□□ -1.88
LIG3P49916 POLR3GP1-201ENST00000594073 261 ntBASIC3.29□□□□□ -1.88
LIG3P49916 uc_338.1-201ENST00000612113 180 ntBASIC3.29□□□□□ -1.88
LIG3P49916 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.29□□□□□ -1.88
LIG3P49916 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.29□□□□□ -1.88
LIG3P49916 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
LIG3P49916 Y_RNA.229-201ENST00000364347 113 ntBASIC3.28□□□□□ -1.88
LIG3P49916 SNORD113-1-201ENST00000365321 69 ntBASIC3.28□□□□□ -1.88
LIG3P49916 SNORA9-201ENST00000384215 133 ntBASIC3.28□□□□□ -1.88
LIG3P49916 MIR491-201ENST00000384877 84 ntBASIC3.28□□□□□ -1.88
LIG3P49916 MIR181B1-201ENST00000385240 110 ntBASIC3.28□□□□□ -1.88
LIG3P49916 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.28□□□□□ -1.88
LIG3P49916 AL135786.1-201ENST00000415892 214 ntBASIC3.28□□□□□ -1.88
LIG3P49916 AC016909.1-201ENST00000415916 166 ntBASIC3.28□□□□□ -1.88
LIG3P49916 AC123900.1-201ENST00000420390 96 ntBASIC3.28□□□□□ -1.88
LIG3P49916 AL606753.1-201ENST00000427435 87 ntBASIC3.28□□□□□ -1.88
LIG3P49916 RPL23AP83-201ENST00000434984 473 ntBASIC3.28□□□□□ -1.88
LIG3P49916 AC006028.1-201ENST00000438379 402 ntBASIC3.28□□□□□ -1.88
LIG3P49916 RPS27P22-201ENST00000478056 241 ntBASIC3.28□□□□□ -1.88
LIG3P49916 AC093259.1-201ENST00000509755 300 ntBASIC3.28□□□□□ -1.88
LIG3P49916 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms