Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SNORA51.10-201ENST00000384418 136 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 MIR1185-2-201ENST00000408687 86 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 RNA5SP95-201ENST00000410319 137 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 AC090960.1-201ENST00000421072 306 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 AC079354.2-201ENST00000453523 154 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 AC007215.1-201ENST00000464893 276 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 RNU6-63P-201ENST00000516690 95 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 AC104383.1-201ENST00000530297 370 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC-0.89□□□□□ -2.55
CUX1P39880 AC012414.2-201ENST00000559474 187 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC-0.89□□□□□ -2.55
CUX1P39880 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 SNORD38B-202ENST00000625943 69 ntBASIC-0.89□□□□□ -2.55
CUX1P39880 RNU6-960P-201ENST00000364056 120 ntBASIC-0.9□□□□□ -2.55
CUX1P39880 RNU6-371P-201ENST00000364283 108 ntBASIC-0.9□□□□□ -2.55
CUX1P39880 SNORA3B-201ENST00000391305 131 ntBASIC-0.9□□□□□ -2.55
CUX1P39880 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.9□□□□□ -2.55
CUX1P39880 RPS29P27-201ENST00000463711 170 ntBASIC-0.9□□□□□ -2.55
CUX1P39880 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC-0.9□□□□□ -2.55
CUX1P39880 SNORA74.3-201ENST00000517108 154 ntBASIC-0.9□□□□□ -2.55
CUX1P39880 MIR3146-201ENST00000580367 79 ntBASIC-0.9□□□□□ -2.55
CUX1P39880 RNU6-289P-201ENST00000364093 107 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 SNORD32A-201ENST00000364805 84 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 RNU6-396P-201ENST00000365369 105 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 RNU6-187P-201ENST00000384139 106 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 Y_RNA.447-201ENST00000384184 113 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC-0.91□□□□□ -2.56
CUX1P39880 AC010424.1-201ENST00000506336 297 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 RNU6-897P-201ENST00000517135 105 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 RNU2-60P-201ENST00000517290 128 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 MIR4676-201ENST00000583078 72 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 MIR4324-201ENST00000584846 72 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 AC012433.1-201ENST00000588916 398 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 AC100814.1-201ENST00000606963 623 ntBASIC-0.91□□□□□ -2.56
CUX1P39880 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC-0.91□□□□□ -2.56
CUX1P39880 AC106754.1-201ENST00000562632 1513 ntBASIC-0.92□□□□□ -2.56
CUX1P39880 Y_RNA.559-201ENST00000384686 107 ntBASIC-0.92□□□□□ -2.56
CUX1P39880 MIR563-201ENST00000385080 79 ntBASIC-0.92□□□□□ -2.56
CUX1P39880 SNORD65.1-201ENST00000390889 71 ntBASIC-0.92□□□□□ -2.56
CUX1P39880 MTCO1P5-201ENST00000433573 344 ntBASIC-0.92□□□□□ -2.56
CUX1P39880 RPS24P1-201ENST00000438550 371 ntBASIC-0.92□□□□□ -2.56
CUX1P39880 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC-0.92□□□□□ -2.56
CUX1P39880 RNU6-377P-201ENST00000515965 102 ntBASIC-0.92□□□□□ -2.56
CUX1P39880 RNU7-128P-201ENST00000517247 62 ntBASIC-0.92□□□□□ -2.56
CUX1P39880 AC087894.1-201ENST00000538359 518 ntBASIC-0.92□□□□□ -2.56
CUX1P39880 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC-0.92□□□□□ -2.56
CUX1P39880 RNU5B-1-201ENST00000363286 116 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU5E-6P-201ENST00000365574 115 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-946P-201ENST00000383878 107 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-692P-201ENST00000384496 107 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 SNORD83B-201ENST00000386745 93 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 SNORA26.3-201ENST00000391119 136 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNA5SP482-201ENST00000391269 118 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 FGFR1OP2P1-201ENST00000395943 500 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6ATAC6P-201ENST00000408132 126 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-447P-201ENST00000410293 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-1118P-201ENST00000410382 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-1076P-201ENST00000410397 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-355P-201ENST00000410427 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-791P-201ENST00000410467 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-705P-201ENST00000410601 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-1100P-201ENST00000410691 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-860P-201ENST00000410860 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-1217P-201ENST00000411276 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 RNU6-785P-201ENST00000411324 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.93□□□□□ -2.56
CUX1P39880 AC092809.3-201ENST00000415453 231 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 AL953862.1-201ENST00000423016 168 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 AC008628.2-201ENST00000502605 298 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 AC091885.1-201ENST00000506658 268 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC-0.93□□□□□ -2.56
CUX1P39880 AC021451.1-201ENST00000523498 1129 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 U6.90-201ENST00000614007 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 AL359547.2-201ENST00000615810 418 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 U6.70-201ENST00000620287 104 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 AC005592.1-201ENST00000566527 1640 ntBASIC-0.93□□□□□ -2.56
CUX1P39880 MIR365A-201ENST00000362260 87 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 SNORD114-14-201ENST00000362723 75 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 RNU6-853P-201ENST00000364306 107 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 RNU6-650P-201ENST00000365658 111 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 U6.112-201ENST00000384129 70 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 MTND3P20-201ENST00000407663 186 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 Z98949.2-201ENST00000440996 144 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 SPINT5P-201ENST00000448174 155 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 AC074290.1-201ENST00000448883 135 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC-0.94□□□□□ -2.56
CUX1P39880 RNU7-43P-201ENST00000516554 64 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 AC022616.3-201ENST00000523940 148 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC-0.94□□□□□ -2.56
CUX1P39880 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC-0.94□□□□□ -2.56
CUX1P39880 AC020891.4-201ENST00000605745 93 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC-0.94□□□□□ -2.56
CUX1P39880 Y_RNA.376-201ENST00000365638 108 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 RPL23AP30-201ENST00000432419 501 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 MTND1P4-201ENST00000435196 415 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-0.94□□□□□ -2.56
CUX1P39880 AC109327.2-201ENST00000448339 378 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 RNU6-221P-201ENST00000459541 99 ntBASIC-0.94□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms