Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNU6-1114P-201ENST00000516022 107 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 AC019176.1-201ENST00000518519 225 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.17□□□□□ -2.22
SHMT2P34897 CBX3P8-201ENST00000532412 525 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 FRG2DP-202ENST00000566967 323 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 MIR5695-201ENST00000579717 85 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 AC022432.1-201ENST00000595739 310 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 7SK.7-201ENST00000603504 247 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 MZT1P2-201ENST00000604387 248 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 AL355802.3-201ENST00000607571 545 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 AL359075.3-201ENST00000613288 217 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 AC093913.1-201ENST00000614178 329 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.17□□□□□ -2.22
SHMT2P34897 AL133216.2-202ENST00000634512 349 ntBASIC1.17□□□□□ -2.22
SHMT2P34897 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
SHMT2P34897 Y_RNA.48-201ENST00000362710 103 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 Y_RNA.86-201ENST00000363020 111 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 RNU5F-3P-201ENST00000363767 117 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 RNU6-392P-201ENST00000364926 101 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 RNU1-139P-201ENST00000391307 165 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 AC005002.2-201ENST00000438228 269 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 AC079140.2-201ENST00000506193 142 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 Y_RNA.682-201ENST00000516457 100 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.16□□□□□ -2.22
SHMT2P34897 AL442163.3-201ENST00000554110 156 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.16□□□□□ -2.22
SHMT2P34897 AC022217.4-201ENST00000604389 163 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 AP001485.1-201ENST00000604799 199 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 AC007014.2-201ENST00000615581 479 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 AC073869.6-201ENST00000640656 341 ntBASIC1.16□□□□□ -2.22
SHMT2P34897 Y_RNA.179-201ENST00000363844 90 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.15□□□□□ -2.23
SHMT2P34897 Y_RNA.473-201ENST00000384333 102 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 MIR1285-1-201ENST00000408593 84 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 USMG5P1-201ENST00000425964 177 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 MTND4P18-201ENST00000447010 465 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.15□□□□□ -2.23
SHMT2P34897 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.15□□□□□ -2.23
SHMT2P34897 AC069439.1-201ENST00000494739 167 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 AC103851.1-201ENST00000506833 274 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 AC026782.1-201ENST00000512952 449 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 SNORA31.10-201ENST00000516482 106 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 RNU6-1016P-201ENST00000516689 94 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.15□□□□□ -2.23
SHMT2P34897 MIR5701-3-201ENST00000578890 82 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 MIR5701-1-201ENST00000585138 82 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 AL929325.1-201ENST00000603096 117 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 AC018462.2-201ENST00000605375 395 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 AC100812.1-201ENST00000607622 580 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 AC010999.1-201ENST00000611856 324 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.15□□□□□ -2.23
SHMT2P34897 MIR5701-2-201ENST00000615634 82 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 MTND5P35-201ENST00000557537 1720 ntBASIC1.15□□□□□ -2.23
SHMT2P34897 MIR26B-201ENST00000362251 77 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 SNORD33-201ENST00000362761 85 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 SNORA12.1-201ENST00000390873 148 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 MIR548K-201ENST00000408406 116 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 USP9YP16-201ENST00000430287 407 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.14□□□□□ -2.23
SHMT2P34897 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.14□□□□□ -2.23
SHMT2P34897 USP9YP23-201ENST00000455085 407 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.14□□□□□ -2.23
SHMT2P34897 RN7SKP179-201ENST00000516126 217 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 RNU1-142P-201ENST00000516682 145 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 Y_RNA.706-201ENST00000516933 99 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 AC091144.1-201ENST00000519573 138 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.14□□□□□ -2.23
SHMT2P34897 AC060780.3-201ENST00000589464 80 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 AC125232.2-201ENST00000592457 143 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 AC005014.2-201ENST00000607795 599 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 AC021506.2-201ENST00000612354 169 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 AL078604.3-201ENST00000615580 211 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 AC002553.4-201ENST00000616896 331 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 U6.73-201ENST00000619194 103 ntBASIC1.14□□□□□ -2.23
SHMT2P34897 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.14□□□□□ -2.23
SHMT2P34897 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.13□□□□□ -2.23
SHMT2P34897 MIR337-201ENST00000362281 93 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 Y_RNA.106-201ENST00000363189 100 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 RNU6-281P-201ENST00000384212 103 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 MIR513A1-201ENST00000385138 129 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 MIR548F5-201ENST00000408421 86 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 RNU6-1001P-201ENST00000411265 100 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 EIF1P1-201ENST00000421436 341 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 AC010154.1-201ENST00000425857 269 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.13□□□□□ -2.23
SHMT2P34897 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.13□□□□□ -2.23
SHMT2P34897 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.13□□□□□ -2.23
SHMT2P34897 Y_RNA.683-201ENST00000516508 93 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 AC005668.1-201ENST00000571142 476 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 MIR3937-201ENST00000580135 106 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 AL390123.1-201ENST00000603216 237 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 AL365434.2-201ENST00000607979 234 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 AL121890.5-201ENST00000620848 304 ntBASIC1.13□□□□□ -2.23
SHMT2P34897 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
SHMT2P34897 RNU6-1123P-201ENST00000362347 106 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 RNU6-1266P-201ENST00000362794 105 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 RNU6-1031P-201ENST00000384773 107 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 MIR618-201ENST00000385287 98 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 RNU6-510P-201ENST00000391239 108 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 Y_RNA.594-201ENST00000410373 140 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms