Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.4□□□□□ -2.03
CIITAP33076 RNU6-626P-201ENST00000363354 107 ntBASIC2.4□□□□□ -2.03
CIITAP33076 SNORD87-201ENST00000364849 89 ntBASIC2.4□□□□□ -2.03
CIITAP33076 RNU6-702P-201ENST00000364982 107 ntBASIC2.4□□□□□ -2.03
CIITAP33076 Y_RNA.461-201ENST00000384263 103 ntBASIC2.4□□□□□ -2.03
CIITAP33076 AL033519.2-201ENST00000403958 392 ntBASIC2.4□□□□□ -2.03
CIITAP33076 RNU2-48P-201ENST00000410694 191 ntBASIC2.4□□□□□ -2.03
CIITAP33076 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.4□□□□□ -2.03
CIITAP33076 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.4□□□□□ -2.03
CIITAP33076 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.4□□□□□ -2.03
CIITAP33076 AC107222.1-201ENST00000510899 637 ntBASIC2.4□□□□□ -2.03
CIITAP33076 AC074133.1-201ENST00000515696 183 ntBASIC2.4□□□□□ -2.03
CIITAP33076 Y_RNA.713-201ENST00000517013 96 ntBASIC2.4□□□□□ -2.03
CIITAP33076 RNU6-570P-201ENST00000517051 105 ntBASIC2.4□□□□□ -2.03
CIITAP33076 AC023157.2-201ENST00000540596 141 ntBASIC2.4□□□□□ -2.03
CIITAP33076 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.4□□□□□ -2.03
CIITAP33076 MIR4524B-201ENST00000581569 115 ntBASIC2.4□□□□□ -2.03
CIITAP33076 MIR376A1-201ENST00000616574 68 ntBASIC2.4□□□□□ -2.03
CIITAP33076 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.4□□□□□ -2.03
CIITAP33076 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
CIITAP33076 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
CIITAP33076 AC005336.3-201ENST00000623833 2679 ntBASIC2.39□□□□□ -2.03
CIITAP33076 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.39□□□□□ -2.03
CIITAP33076 RNU1-23P-201ENST00000363361 144 ntBASIC2.39□□□□□ -2.03
CIITAP33076 Y_RNA.286-201ENST00000364813 102 ntBASIC2.39□□□□□ -2.03
CIITAP33076 Y_RNA.462-201ENST00000384268 102 ntBASIC2.39□□□□□ -2.03
CIITAP33076 SNORA67.3-201ENST00000384366 140 ntBASIC2.39□□□□□ -2.03
CIITAP33076 RNU1-148P-201ENST00000384472 162 ntBASIC2.39□□□□□ -2.03
CIITAP33076 Y_RNA.556-201ENST00000384677 113 ntBASIC2.39□□□□□ -2.03
CIITAP33076 SNORA40.19-201ENST00000390846 128 ntBASIC2.39□□□□□ -2.03
CIITAP33076 RNU6-1203P-201ENST00000410703 110 ntBASIC2.39□□□□□ -2.03
CIITAP33076 RNA5SP270-201ENST00000411361 118 ntBASIC2.39□□□□□ -2.03
CIITAP33076 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.39□□□□□ -2.03
CIITAP33076 CBX3P6-201ENST00000430257 527 ntBASIC2.39□□□□□ -2.03
CIITAP33076 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.39□□□□□ -2.03
CIITAP33076 HSPE1P25-201ENST00000455484 251 ntBASIC2.39□□□□□ -2.03
CIITAP33076 ATP5EP1-201ENST00000510257 156 ntBASIC2.39□□□□□ -2.03
CIITAP33076 MTND1P19-201ENST00000511780 315 ntBASIC2.39□□□□□ -2.03
CIITAP33076 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.39□□□□□ -2.03
CIITAP33076 SNORD14A-201ENST00000606526 91 ntBASIC2.39□□□□□ -2.03
CIITAP33076 AP001282.2-201ENST00000616149 309 ntBASIC2.39□□□□□ -2.03
CIITAP33076 MIR1248-201ENST00000629190 106 ntBASIC2.39□□□□□ -2.03
CIITAP33076 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
CIITAP33076 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CIITAP33076 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.39□□□□□ -2.03
CIITAP33076 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.39□□□□□ -2.03
CIITAP33076 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
CIITAP33076 ZNF355P-201ENST00000427301 3216 ntBASIC2.38□□□□□ -2.03
CIITAP33076 RNU5F-3P-201ENST00000363767 117 ntBASIC2.38□□□□□ -2.03
CIITAP33076 Y_RNA.541-201ENST00000384640 113 ntBASIC2.38□□□□□ -2.03
CIITAP33076 Y_RNA.570-201ENST00000384750 101 ntBASIC2.38□□□□□ -2.03
CIITAP33076 RNU6-713P-201ENST00000384761 107 ntBASIC2.38□□□□□ -2.03
CIITAP33076 Y_RNA.581-201ENST00000391017 97 ntBASIC2.38□□□□□ -2.03
CIITAP33076 RAB28P5-201ENST00000427490 651 ntBASIC2.38□□□□□ -2.03
CIITAP33076 UQCRBP2-201ENST00000447827 297 ntBASIC2.38□□□□□ -2.03
CIITAP33076 SNORD127-201ENST00000458892 86 ntBASIC2.38□□□□□ -2.03
CIITAP33076 RNU6-496P-201ENST00000516145 99 ntBASIC2.38□□□□□ -2.03
CIITAP33076 Y_RNA.680-201ENST00000516441 93 ntBASIC2.38□□□□□ -2.03
CIITAP33076 IGLV3-17-201ENST00000519099 244 ntBASIC2.38□□□□□ -2.03
CIITAP33076 CYCSP23-201ENST00000519781 313 ntBASIC2.38□□□□□ -2.03
CIITAP33076 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.38□□□□□ -2.03
CIITAP33076 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.38□□□□□ -2.03
CIITAP33076 AC026271.5-201ENST00000577873 130 ntBASIC2.38□□□□□ -2.03
CIITAP33076 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.38□□□□□ -2.03
CIITAP33076 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.38□□□□□ -2.03
CIITAP33076 AC068205.3-201ENST00000636385 468 ntBASIC2.38□□□□□ -2.03
CIITAP33076 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CIITAP33076 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.38□□□□□ -2.03
CIITAP33076 ZNF720P1-201ENST00000562403 1939 ntBASIC2.37□□□□□ -2.03
CIITAP33076 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.37□□□□□ -2.03
CIITAP33076 Y_RNA.16-201ENST00000362421 102 ntBASIC2.37□□□□□ -2.03
CIITAP33076 Y_RNA.101-201ENST00000363154 102 ntBASIC2.37□□□□□ -2.03
CIITAP33076 SNORD113-8-201ENST00000363497 74 ntBASIC2.37□□□□□ -2.03
CIITAP33076 SNORA25B-201ENST00000365507 128 ntBASIC2.37□□□□□ -2.03
CIITAP33076 MIR320B2-201ENST00000408479 138 ntBASIC2.37□□□□□ -2.03
CIITAP33076 RNU2-2P-201ENST00000410396 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 RNU6-1199P-201ENST00000411249 104 ntBASIC2.37□□□□□ -2.03
CIITAP33076 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.37□□□□□ -2.03
CIITAP33076 AL445646.1-201ENST00000431784 216 ntBASIC2.37□□□□□ -2.03
CIITAP33076 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.37□□□□□ -2.03
CIITAP33076 RNU6-625P-201ENST00000459412 107 ntBASIC2.37□□□□□ -2.03
CIITAP33076 snoU13.26-201ENST00000459452 105 ntBASIC2.37□□□□□ -2.03
CIITAP33076 AC018868.1-201ENST00000491307 315 ntBASIC2.37□□□□□ -2.03
CIITAP33076 RNA5SP137-201ENST00000516833 135 ntBASIC2.37□□□□□ -2.03
CIITAP33076 IGKV3-31-201ENST00000523109 329 ntBASIC2.37□□□□□ -2.03
CIITAP33076 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.37□□□□□ -2.03
CIITAP33076 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.37□□□□□ -2.03
CIITAP33076 SNORD11B-201ENST00000607707 90 ntBASIC2.37□□□□□ -2.03
CIITAP33076 AC062037.2-201ENST00000610137 73 ntBASIC2.37□□□□□ -2.03
CIITAP33076 U2.15-201ENST00000611544 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 U2.16-201ENST00000613119 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 U2.12-201ENST00000613778 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 U2.20-201ENST00000613956 192 ntBASIC2.37□□□□□ -2.03
CIITAP33076 U2.9-201ENST00000615427 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 U2.11-201ENST00000616345 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 U2.2-201ENST00000616535 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 U2.3-201ENST00000617785 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 U2.19-201ENST00000618602 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 RNU2-1-201ENST00000618664 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 U2.6-201ENST00000619225 191 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms