Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC0.3□□□□□ -2.36
LIMS3P0CW19 MIR5692C1-201ENST00000585309 91 ntBASIC0.3□□□□□ -2.36
LIMS3P0CW19 7SK.7-201ENST00000603504 247 ntBASIC0.3□□□□□ -2.36
LIMS3P0CW19 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.3□□□□□ -2.36
LIMS3P0CW19 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.29□□□□□ -2.36
LIMS3P0CW19 MIRLET7C-201ENST00000362160 84 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 RNU5F-3P-201ENST00000363767 117 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 Y_RNA.267-201ENST00000364679 109 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 Y_RNA.319-201ENST00000365138 92 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 RNU6-793P-201ENST00000384233 104 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 MIR526A1-201ENST00000384897 85 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 MIR32-201ENST00000384965 70 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 MTND2P18-201ENST00000419962 1030 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 AC244098.3-201ENST00000424803 96 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 MTCYBP10-201ENST00000424905 650 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 MRPS10P2-201ENST00000431226 381 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 AL358934.1-201ENST00000432346 324 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 MTND4P18-201ENST00000447010 465 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC0.29□□□□□ -2.36
LIMS3P0CW19 AP001372.4-201ENST00000524889 472 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.29□□□□□ -2.36
LIMS3P0CW19 MIR3915-201ENST00000578518 97 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.29□□□□□ -2.36
LIMS3P0CW19 AC109347.2-201ENST00000610220 349 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 AL354950.2-201ENST00000617939 290 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 AC022960.3-201ENST00000619794 441 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 AC007494.3-201ENST00000624660 743 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 MIR6516-201ENST00000630554 81 ntBASIC0.29□□□□□ -2.36
LIMS3P0CW19 MIR337-201ENST00000362281 93 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 RNA5SP347-201ENST00000362445 119 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 SNORA1B-201ENST00000362535 133 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 RNY1P10-201ENST00000363268 113 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 RNU6-833P-201ENST00000363486 107 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 RNU6-727P-201ENST00000363592 107 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 RNU6-873P-201ENST00000363833 107 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 RNU4-9P-201ENST00000364951 139 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 Y_RNA.336-201ENST00000365307 109 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 RNU5A-6P-201ENST00000384136 116 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 MT-TH-201ENST00000387441 69 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 MIR891A-201ENST00000401237 79 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 AC091021.1-201ENST00000468051 388 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 SNORA19.2-201ENST00000516013 114 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 AP003716.2-201ENST00000528260 108 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 AC016957.1-201ENST00000534895 309 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 AC027288.2-201ENST00000553028 243 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 AC011195.1-201ENST00000578177 177 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 AC100830.2-201ENST00000581636 240 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 MIR5087-201ENST00000635826 76 ntBASIC0.28□□□□□ -2.36
LIMS3P0CW19 Y_RNA.184-201ENST00000363884 108 ntBASIC0.27□□□□□ -2.37
LIMS3P0CW19 SNORA50A-201ENST00000384225 134 ntBASIC0.27□□□□□ -2.37
LIMS3P0CW19 MIR153-2-201ENST00000385225 87 ntBASIC0.27□□□□□ -2.37
LIMS3P0CW19 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC0.27□□□□□ -2.37
LIMS3P0CW19 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC0.27□□□□□ -2.37
LIMS3P0CW19 MTCO2P16-201ENST00000436962 677 ntBASIC0.27□□□□□ -2.37
LIMS3P0CW19 AC091179.3-201ENST00000474761 144 ntBASIC0.27□□□□□ -2.37
LIMS3P0CW19 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
LIMS3P0CW19 AC060788.1-201ENST00000521318 469 ntBASIC0.27□□□□□ -2.37
LIMS3P0CW19 AC091178.2-201ENST00000584401 117 ntBASIC0.27□□□□□ -2.37
LIMS3P0CW19 AL121757.2-201ENST00000611223 313 ntBASIC0.27□□□□□ -2.37
LIMS3P0CW19 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC0.27□□□□□ -2.37
LIMS3P0CW19 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC0.27□□□□□ -2.37
LIMS3P0CW19 RNU6-280P-201ENST00000364145 104 ntBASIC0.26□□□□□ -2.37
LIMS3P0CW19 AL590002.1-201ENST00000406554 418 ntBASIC0.26□□□□□ -2.37
LIMS3P0CW19 RNA5SP222-201ENST00000411039 105 ntBASIC0.26□□□□□ -2.37
LIMS3P0CW19 MTCO2P12-201ENST00000427426 682 ntBASIC0.26□□□□□ -2.37
LIMS3P0CW19 DAP3P1-201ENST00000441522 278 ntBASIC0.26□□□□□ -2.37
LIMS3P0CW19 MTND1P27-201ENST00000451117 902 ntBASIC0.26□□□□□ -2.37
LIMS3P0CW19 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.26□□□□□ -2.37
LIMS3P0CW19 MTCO2P4-201ENST00000517968 247 ntBASIC0.26□□□□□ -2.37
LIMS3P0CW19 AC104383.1-201ENST00000530297 370 ntBASIC0.26□□□□□ -2.37
LIMS3P0CW19 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.26□□□□□ -2.37
LIMS3P0CW19 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.26□□□□□ -2.37
LIMS3P0CW19 AC006504.8-201ENST00000621046 635 ntBASIC0.26□□□□□ -2.37
LIMS3P0CW19 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
LIMS3P0CW19 SNORD50.1-201ENST00000362987 71 ntBASIC0.25□□□□□ -2.37
LIMS3P0CW19 SNORA36.2-201ENST00000384004 127 ntBASIC0.25□□□□□ -2.37
LIMS3P0CW19 AC079354.2-201ENST00000453523 154 ntBASIC0.25□□□□□ -2.37
LIMS3P0CW19 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC0.25□□□□□ -2.37
LIMS3P0CW19 AC136443.5-201ENST00000603741 370 ntBASIC0.25□□□□□ -2.37
LIMS3P0CW19 AL133215.3-201ENST00000609801 448 ntBASIC0.25□□□□□ -2.37
LIMS3P0CW19 AL158063.1-201ENST00000615349 536 ntBASIC0.25□□□□□ -2.37
LIMS3P0CW19 AC134026.1-201ENST00000623249 2239 ntBASIC0.25□□□□□ -2.37
LIMS3P0CW19 AC090625.1-201ENST00000357130 210 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 Y_RNA.338-201ENST00000365320 114 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 RNU6-541P-201ENST00000384709 110 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 SNORD37.1-201ENST00000390968 65 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 RNU6-1158P-201ENST00000391167 107 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 SNORD111-201ENST00000408139 94 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 MIR1185-1-201ENST00000408598 86 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 RNU6-994P-201ENST00000410507 111 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 AL365203.2-201ENST00000423444 196 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 AL353572.1-201ENST00000442490 417 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.24□□□□□ -2.37
LIMS3P0CW19 HMGN2P26-201ENST00000463169 339 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 AC002350.1-201ENST00000490759 375 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 Y_RNA.654-201ENST00000497848 106 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 RNU6-1038P-201ENST00000516516 104 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.24□□□□□ -2.37
LIMS3P0CW19 MIR4769-201ENST00000584126 77 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 AL158209.2-201ENST00000619266 216 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 252.1 ms