Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 RNU6-1266P-201ENST00000362794 105 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 Y_RNA.251-201ENST00000364551 99 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.06□□□□□ -2.24
CLDN9O95484 Y_RNA.415-201ENST00000384012 112 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 RNU6-1105P-201ENST00000384774 107 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 MIR618-201ENST00000385287 98 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 RNU6-908P-201ENST00000410160 94 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 RN7SKP200-201ENST00000410564 320 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 RNU2-16P-201ENST00000410712 136 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 RPL30P16-201ENST00000419341 429 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 RPS29P28-201ENST00000446439 141 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.06□□□□□ -2.24
CLDN9O95484 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 AC027288.2-201ENST00000553028 243 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 RN7SL793P-201ENST00000583259 296 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 MIR8054-201ENST00000620877 86 ntBASIC1.06□□□□□ -2.24
CLDN9O95484 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
CLDN9O95484 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
CLDN9O95484 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.05□□□□□ -2.24
CLDN9O95484 MIR96-201ENST00000362288 78 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 Y_RNA.68-201ENST00000362881 102 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 U3.8-201ENST00000363675 217 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 Y_RNA.530-201ENST00000384587 101 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
CLDN9O95484 RPL37P10-201ENST00000412884 288 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.05□□□□□ -2.24
CLDN9O95484 RNU7-66P-201ENST00000459469 62 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 COX6CP14-201ENST00000469580 174 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 RPL30P10-201ENST00000488148 337 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 RNU6-256P-201ENST00000516747 97 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 UBL5P4-201ENST00000562584 236 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 AC022432.1-201ENST00000595739 310 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.05□□□□□ -2.24
CLDN9O95484 AL133216.2-202ENST00000634512 349 ntBASIC1.05□□□□□ -2.24
CLDN9O95484 Y_RNA.256-201ENST00000364594 104 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 RNU1-93P-201ENST00000364704 169 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 RNY1P4-201ENST00000384595 115 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 MIR520E-201ENST00000384867 87 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 MRPL42P3-201ENST00000401492 326 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 MIR1185-2-201ENST00000408687 86 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.04□□□□□ -2.24
CLDN9O95484 PGBD4P5-201ENST00000445958 426 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 AC091179.3-201ENST00000474761 144 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 RNU7-128P-201ENST00000517247 62 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 AK6P2-201ENST00000549020 471 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 NBR2-204ENST00000587322 63 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 AC019193.3-201ENST00000609144 554 ntBASIC1.04□□□□□ -2.24
CLDN9O95484 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.04□□□□□ -2.24
CLDN9O95484 Y_RNA.38-201ENST00000362617 102 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 RNU6-451P-201ENST00000362921 107 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 RNU1-22P-201ENST00000363334 158 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 RNU4-41P-201ENST00000364426 143 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 RNU6-440P-201ENST00000390882 105 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 MIR548J-201ENST00000408833 112 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 MTND1P1-201ENST00000445453 368 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 MTND1P29-201ENST00000448112 647 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.03□□□□□ -2.24
CLDN9O95484 NDUFB4P10-201ENST00000452541 359 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 RPL39P38-201ENST00000467018 153 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.03□□□□□ -2.24
CLDN9O95484 MTND2P38-201ENST00000522536 667 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.03□□□□□ -2.24
CLDN9O95484 FRG2DP-202ENST00000566967 323 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 AL390123.1-201ENST00000603216 237 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 AC124303.1-201ENST00000605703 360 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.03□□□□□ -2.24
CLDN9O95484 AL021879.1-201ENST00000611756 288 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 U6.73-201ENST00000619194 103 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 AC009248.2-201ENST00000619826 254 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 AC008133.2-201ENST00000624540 351 ntBASIC1.03□□□□□ -2.24
CLDN9O95484 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.03□□□□□ -2.24
CLDN9O95484 RNY3P3-201ENST00000363816 102 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 RNU6-280P-201ENST00000364145 104 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 Y_RNA.212-201ENST00000364177 102 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 RNU6-793P-201ENST00000384233 104 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 SNORD116-2-201ENST00000384274 95 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 Y_RNA.559-201ENST00000384686 107 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 SNORD116-6-201ENST00000384711 96 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 MIR216A-201ENST00000385063 110 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 RNU6-332P-201ENST00000391193 108 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 MTATP6P13-201ENST00000438531 667 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.02□□□□□ -2.25
CLDN9O95484 MIR3672-201ENST00000584290 82 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 PIGPP4-201ENST00000584447 307 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 MIR4295-201ENST00000585286 85 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 7SK.7-201ENST00000603504 247 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 AC106754.2-201ENST00000623006 233 ntBASIC1.02□□□□□ -2.25
CLDN9O95484 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
CLDN9O95484 Y_RNA.135-201ENST00000363439 95 ntBASIC1.01□□□□□ -2.25
CLDN9O95484 RNU6-137P-201ENST00000363680 108 ntBASIC1.01□□□□□ -2.25
CLDN9O95484 RNU6-17P-201ENST00000384245 107 ntBASIC1.01□□□□□ -2.25
CLDN9O95484 SNORA25-201ENST00000384384 134 ntBASIC1.01□□□□□ -2.25
CLDN9O95484 RNU6-18P-201ENST00000384527 107 ntBASIC1.01□□□□□ -2.25
CLDN9O95484 RNU6-306P-201ENST00000384617 107 ntBASIC1.01□□□□□ -2.25
CLDN9O95484 MIR222-201ENST00000384992 110 ntBASIC1.01□□□□□ -2.25
CLDN9O95484 RNU6-159P-201ENST00000391080 106 ntBASIC1.01□□□□□ -2.25
CLDN9O95484 AL034345.1-201ENST00000407768 123 ntBASIC1.01□□□□□ -2.25
CLDN9O95484 ZNF885P-201ENST00000420174 1098 ntBASIC1.01□□□□□ -2.25
CLDN9O95484 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms