Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
HOXC11O43248 RNU6-112P-201ENST00000363599 104 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 RNU6-867P-201ENST00000364956 107 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 RNU6-318P-201ENST00000384283 103 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 RNA5SP475-201ENST00000410568 110 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 AC016909.1-201ENST00000415916 166 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 MRPS18CP6-201ENST00000423587 223 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 HMGN2P23-201ENST00000456759 269 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 RNU6-625P-201ENST00000459412 107 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.04□□□□□ -2.08
HOXC11O43248 SNORA40.9-201ENST00000515895 93 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 AC084364.2-201ENST00000546924 395 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 AC010900.2-201ENST00000604508 210 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 MIR6845-201ENST00000613182 61 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 U2.1-201ENST00000618978 145 ntBASIC2.04□□□□□ -2.08
HOXC11O43248 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
HOXC11O43248 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.03□□□□□ -2.08
HOXC11O43248 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
HOXC11O43248 RNU4-79P-201ENST00000362764 141 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 RNY3P11-201ENST00000364153 102 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 RNU5E-4P-201ENST00000364931 120 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 MIR583-201ENST00000384846 75 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXC11O43248 AC112492.4-201ENST00000456549 352 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 AC010409.1-201ENST00000487382 476 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 HMGN1P13-201ENST00000505795 138 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 Y_RNA.661-201ENST00000516003 99 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 SNORA31.17-201ENST00000516953 127 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 RNU6-548P-201ENST00000517083 115 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 RAB11AP2-201ENST00000545905 639 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 AL137100.2-201ENST00000555786 315 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 AC022254.1-201ENST00000567857 235 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 MIR3684-201ENST00000579779 74 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 AC022432.1-201ENST00000595739 310 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 AL357075.2-201ENST00000614906 189 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.03□□□□□ -2.08
HOXC11O43248 ZNF72P-201ENST00000425869 1908 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 Y_RNA.287-201ENST00000364853 94 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 Y_RNA.315-201ENST00000365117 102 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 Y_RNA.463-201ENST00000384271 102 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 ELOCP21-201ENST00000412558 336 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.02□□□□□ -2.09
HOXC11O43248 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 RPL36AP21-201ENST00000490372 323 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 HMGB3P17-201ENST00000504195 649 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
HOXC11O43248 RNU1-142P-201ENST00000516682 145 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 AC024995.1-201ENST00000523014 93 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 AL442163.3-201ENST00000554110 156 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 AL359075.3-201ENST00000613288 217 ntBASIC2.02□□□□□ -2.09
HOXC11O43248 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
HOXC11O43248 RNU4-42P-201ENST00000364738 142 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 Y_RNA.431-201ENST00000384086 102 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 RNU6-1310P-201ENST00000384153 107 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 RPL23AP7-203ENST00000449021 469 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 RNU6-1170P-201ENST00000515974 106 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 RNU6-976P-201ENST00000516086 111 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 RNU6-911P-201ENST00000516523 104 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 RNA5SP364-201ENST00000516938 78 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 SNORA44.1-201ENST00000517031 108 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.01□□□□□ -2.09
HOXC11O43248 GNAI2P1-201ENST00000541815 315 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 AC110588.1-201ENST00000559699 137 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 MIR5089-201ENST00000580047 84 ntBASIC2.01□□□□□ -2.09
HOXC11O43248 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
HOXC11O43248 RNA5SP467-201ENST00000391274 118 ntBASIC2□□□□□ -2.09
HOXC11O43248 MTCO3P19-201ENST00000415864 321 ntBASIC2□□□□□ -2.09
HOXC11O43248 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2□□□□□ -2.09
HOXC11O43248 AC245047.4-201ENST00000433189 144 ntBASIC2□□□□□ -2.09
HOXC11O43248 RNA5SP481-201ENST00000516814 122 ntBASIC2□□□□□ -2.09
HOXC11O43248 AL117336.2-201ENST00000602435 335 ntBASIC2□□□□□ -2.09
HOXC11O43248 MIR3674-201ENST00000636576 68 ntBASIC2□□□□□ -2.09
HOXC11O43248 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2□□□□□ -2.09
HOXC11O43248 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2□□□□□ -2.09
HOXC11O43248 RNU6-926P-201ENST00000384075 107 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 RNY3P4-201ENST00000384428 101 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 RNU6-296P-201ENST00000384608 107 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
HOXC11O43248 Y_RNA.579-201ENST00000390939 94 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 SNORD78.2-201ENST00000391076 69 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.99□□□□□ -2.09
HOXC11O43248 AC096644.2-201ENST00000429278 159 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 FCF1P4-201ENST00000448326 183 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 SNORD65B-201ENST00000459126 73 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 Y_RNA.638-201ENST00000459374 113 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 AC027575.1-201ENST00000481064 460 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 AC010598.1-201ENST00000510378 103 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 RNU6-408P-201ENST00000515910 100 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 AC027419.1-201ENST00000522976 328 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 AC006600.1-201ENST00000572529 153 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 VN1R91P-201ENST00000594377 169 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 AL138825.1-201ENST00000618587 192 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 AL353997.5-201ENST00000618886 171 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 AC006435.5-201ENST00000624486 112 ntBASIC1.99□□□□□ -2.09
HOXC11O43248 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
HOXC11O43248 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.98□□□□□ -2.09
HOXC11O43248 Y_RNA.39-201ENST00000362620 98 ntBASIC1.98□□□□□ -2.09
HOXC11O43248 RNA5SP99-201ENST00000364020 114 ntBASIC1.98□□□□□ -2.09
HOXC11O43248 RNU6-1186P-201ENST00000410429 97 ntBASIC1.98□□□□□ -2.09
HOXC11O43248 CYCSP49-201ENST00000420810 319 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms