Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU7-99P-201ENST00000516271 62 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 AC008752.3-201ENST00000588113 712 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 AC009994.1-201ENST00000606889 253 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 AL008636.1-201ENST00000625038 1018 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 ANKRD20A17P-201ENST00000511745 1330 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 RNU6-562P-201ENST00000362731 107 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 U8.5-201ENST00000364528 136 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 Y_RNA.270-201ENST00000364693 104 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 RNU6-396P-201ENST00000365369 105 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 Y_RNA.376-201ENST00000365638 108 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 RNU6-796P-201ENST00000391086 107 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 AL512326.2-201ENST00000426359 151 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 MIR2115-201ENST00000516657 100 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 AC023442.1-201ENST00000531247 422 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 RPL21P9-201ENST00000556149 474 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 MIR3152-201ENST00000579801 74 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 MIR3165-201ENST00000579874 75 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 MIR3925-201ENST00000584674 77 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 Z99289.3-201ENST00000605586 594 ntBASIC-1.26□□□□□ -2.61
CCDC88BA6NC98 RNU6-1048P-201ENST00000364054 107 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 RNU6-1162P-201ENST00000384443 104 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 MIR19A-201ENST00000384878 82 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 AL355994.1-201ENST00000424379 260 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 POLR2KP2-201ENST00000438155 177 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 SUMO1P3-201ENST00000439961 304 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 RNU7-57P-201ENST00000459540 60 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 SNORA18.7-201ENST00000516910 131 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 SNORA74.3-201ENST00000517108 154 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 AC090572.1-201ENST00000519251 160 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 AC006380.1-201ENST00000603598 186 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 AC245008.1-201ENST00000608123 476 ntBASIC-1.27□□□□□ -2.61
CCDC88BA6NC98 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 MIR101-2-201ENST00000362195 79 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 RNA5SP48-201ENST00000363969 126 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 RNU5E-7P-201ENST00000365290 117 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 RNU6-811P-201ENST00000384069 107 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 RNU6-293P-201ENST00000411259 106 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 MTCYBP42-201ENST00000444653 1130 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 AC119751.4-201ENST00000507498 357 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 RNU6-504P-201ENST00000516568 104 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 Y_RNA.689-201ENST00000516589 107 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 RNU6-677P-201ENST00000516914 101 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 AC104383.1-201ENST00000530297 370 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC-1.28□□□□□ -2.61
CCDC88BA6NC98 MIR655-201ENST00000362159 97 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 RNU6-1141P-201ENST00000364520 107 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 RNU6-580P-201ENST00000365159 107 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 RNU6-1179P-201ENST00000384667 107 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 AL355143.1-201ENST00000407101 841 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 AC013470.1-201ENST00000453438 462 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 AC079395.1-201ENST00000510981 262 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 RNU6-1291P-201ENST00000516591 104 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 RNU7-28P-201ENST00000516759 62 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 RNU6-448P-201ENST00000517052 107 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 AC005332.6-201ENST00000613178 446 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 AC120349.2-201ENST00000625002 298 ntBASIC-1.29□□□□□ -2.62
CCDC88BA6NC98 MIRLET7C-201ENST00000362160 84 ntBASIC-1.3□□□□□ -2.62
CCDC88BA6NC98 Y_RNA.477-201ENST00000384352 108 ntBASIC-1.3□□□□□ -2.62
CCDC88BA6NC98 MIR501-201ENST00000390204 84 ntBASIC-1.3□□□□□ -2.62
CCDC88BA6NC98 AC092809.3-201ENST00000415453 231 ntBASIC-1.3□□□□□ -2.62
CCDC88BA6NC98 AC078809.1-201ENST00000427601 140 ntBASIC-1.3□□□□□ -2.62
CCDC88BA6NC98 AC103996.1-201ENST00000555468 102 ntBASIC-1.3□□□□□ -2.62
CCDC88BA6NC98 AP001033.2-201ENST00000609701 1003 ntBASIC-1.3□□□□□ -2.62
CCDC88BA6NC98 AC253576.2-201ENST00000618815 580 ntBASIC-1.3□□□□□ -2.62
CCDC88BA6NC98 RNU6-384P-201ENST00000364900 104 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 MIR208B-201ENST00000401172 77 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 AC119618.1-201ENST00000434191 222 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 ZNF736P12Y-201ENST00000443152 1243 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 ZNF736P4Y-201ENST00000454995 1243 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 AP002802.2-201ENST00000605877 235 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 AC103706.2-201ENST00000638080 240 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 ZNF204P-201ENST00000416749 2397 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 RNU6-353P-201ENST00000364266 108 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 RNU6-744P-201ENST00000365557 107 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 SNORD14.1-201ENST00000365609 90 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 RNU6-1316P-201ENST00000384242 108 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 MIR802-201ENST00000390235 94 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 MIR873-201ENST00000401120 77 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 PCNPP5-201ENST00000452246 481 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 AC104563.1-201ENST00000476147 376 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 AC046134.1-201ENST00000514454 666 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 RNU6-760P-201ENST00000516078 97 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 RNU7-128P-201ENST00000517247 62 ntBASIC-1.31□□□□□ -2.62
CCDC88BA6NC98 AC025647.1-201ENST00000517879 253 ntBASIC-1.31□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms