Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 NDUFB4P10-201ENST00000452541 359 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 RNU6-1208P-201ENST00000459588 107 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 AC098869.1-201ENST00000481627 292 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 RNA5SP401-201ENST00000515920 127 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 SNORA25.14-201ENST00000516481 132 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 RNU6-58P-201ENST00000517143 103 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 AL117336.2-201ENST00000602435 335 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 AC004832.4-201ENST00000608952 331 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 AC092807.2-201ENST00000609367 243 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 AC017083.3-201ENST00000609955 700 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 AL391903.3-201ENST00000612158 163 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 MIR6079-201ENST00000635807 62 ntBASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
VCX3AQ9NNX9 AC005592.1-201ENST00000566527 1640 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 Y_RNA.1-201ENST00000352915 104 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 RNU4-66P-201ENST00000365199 138 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 RNU6-214P-201ENST00000384130 107 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 MIR1261-201ENST00000408659 82 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 MTCO1P20-201ENST00000425366 358 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 FABP5P4-201ENST00000437203 171 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 MRPS10P1-201ENST00000448483 130 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 AC079354.2-201ENST00000453523 154 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 LINC01399-202ENST00000458450 244 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 SNORD65B-201ENST00000459126 73 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 AC108210.2-201ENST00000503681 201 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 AC113410.1-201ENST00000505029 247 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 RNU7-12P-201ENST00000516030 62 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 RNU6-1332P-201ENST00000516666 104 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 AC016957.1-201ENST00000534895 309 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 AC100830.2-201ENST00000581636 240 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 AC073648.5-201ENST00000603502 305 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 AC080078.3-201ENST00000605407 463 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 AC012557.2-201ENST00000605919 418 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 AC009229.3-201ENST00000608056 282 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 AL133215.3-201ENST00000609801 448 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 AL391262.2-201ENST00000622466 494 ntBASIC0.49□□□□□ -2.33
VCX3AQ9NNX9 MTND4P12-201ENST00000498999 1377 ntBASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 SNORD50.1-201ENST00000362987 71 ntBASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 SNORD115-32-201ENST00000364079 82 ntBASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 SNORA75-201ENST00000384158 137 ntBASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 MIR32-201ENST00000384965 70 ntBASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 Z82188.1-201ENST00000436709 154 ntBASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 MIR3973-201ENST00000579824 107 ntBASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 MIR3192-201ENST00000584920 77 ntBASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 AC007684.1-201ENST00000609671 477 ntBASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 AC073114.1-201ENST00000612027 490 ntBASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
VCX3AQ9NNX9 SNORD113-7-201ENST00000363762 77 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 RNU6-873P-201ENST00000363833 107 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 Y_RNA.319-201ENST00000365138 92 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 MIR514A2-201ENST00000385131 88 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 MIR514A3-201ENST00000385132 88 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 EIF4E2P1-201ENST00000393781 255 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 SNORD99-201ENST00000408612 74 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 MTCO2P7-201ENST00000446518 666 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 AC233266.1-201ENST00000454518 96 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 RPS3AP17-201ENST00000472594 777 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 AC010469.2-201ENST00000496412 480 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 SNORA70.12-201ENST00000516084 153 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 RNA5SP121-201ENST00000516537 101 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 Y_RNA.695-201ENST00000516715 107 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 LRRC34P1-201ENST00000542742 915 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 AC027288.2-201ENST00000553028 243 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 MIR4760-201ENST00000585040 80 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 AC087752.4-201ENST00000605911 462 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 AP001330.5-201ENST00000607176 411 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 AC242852.1-201ENST00000612151 96 ntBASIC0.47□□□□□ -2.33
VCX3AQ9NNX9 SNORD18A-201ENST00000363753 72 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 Y_RNA.296-201ENST00000364930 108 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 RNU4-9P-201ENST00000364951 139 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 RNU6-945P-201ENST00000383947 107 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 MIR520E-201ENST00000384867 87 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 MIR526A1-201ENST00000384897 85 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 AL590002.1-201ENST00000406554 418 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 RNU4-55P-201ENST00000410731 137 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 RNU7-187P-201ENST00000458985 68 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 AC083798.1-201ENST00000472671 131 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 AC091179.3-201ENST00000474761 144 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 AL163540.1-201ENST00000485382 386 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 SNORD111.1-201ENST00000516421 86 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 AC145350.1-201ENST00000567426 208 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 AL158063.1-201ENST00000615349 536 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 AC073534.2-201ENST00000620377 381 ntBASIC0.46□□□□□ -2.34
VCX3AQ9NNX9 AC068700.1-201ENST00000565862 3754 ntBASIC0.45□□□□□ -2.34
VCX3AQ9NNX9 MIRLET7C-201ENST00000362160 84 ntBASIC0.45□□□□□ -2.34
VCX3AQ9NNX9 RNU6-522P-201ENST00000364497 107 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms