Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 AL390237.1-201ENST00000404226 1415 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 RNU6-1097P-201ENST00000363586 107 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 U8.16-201ENST00000391279 133 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 MTCO2P12-201ENST00000427426 682 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AC004386.2-201ENST00000441858 148 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 RNU7-99P-201ENST00000516271 62 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 RNA5SP134-201ENST00000516492 96 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AC025647.1-201ENST00000517879 253 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 MRPS36P4-201ENST00000534436 298 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 Z84480.1-201ENST00000605131 311 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AC138749.5-201ENST00000611461 208 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 RMST_3.1-201ENST00000611651 109 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AC122133.1-201ENST00000613964 233 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AL138726.1-201ENST00000614873 333 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 RNU6-227P-201ENST00000362865 103 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 Y_RNA.280-201ENST00000364765 112 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 Y_RNA.294-201ENST00000364916 102 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 RNU6-157P-201ENST00000383957 107 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 RNU6-933P-201ENST00000384424 107 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AL355143.1-201ENST00000407101 841 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 RNA5SP127-201ENST00000411051 133 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 RPS3AP3-201ENST00000411933 242 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AC005002.2-201ENST00000438228 269 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AL049830.1-201ENST00000468034 425 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 LARP7P1-201ENST00000605576 316 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.1□□□□□ -2.39
KIAA1549Q9HCM3 RNU6-1127P-201ENST00000384580 107 ntBASIC0.09□□□□□ -2.39
KIAA1549Q9HCM3 AL162725.1-201ENST00000435405 301 ntBASIC0.09□□□□□ -2.39
KIAA1549Q9HCM3 MTCO1P19-201ENST00000443487 500 ntBASIC0.09□□□□□ -2.39
KIAA1549Q9HCM3 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.09□□□□□ -2.39
KIAA1549Q9HCM3 OR9P1P-201ENST00000496431 281 ntBASIC0.09□□□□□ -2.39
KIAA1549Q9HCM3 MIR3682-201ENST00000581338 84 ntBASIC0.09□□□□□ -2.39
KIAA1549Q9HCM3 AL117336.2-201ENST00000602435 335 ntBASIC0.09□□□□□ -2.39
KIAA1549Q9HCM3 U6.73-201ENST00000619194 103 ntBASIC0.09□□□□□ -2.39
KIAA1549Q9HCM3 SNORD113.3-201ENST00000364630 78 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 RNA5SP482-201ENST00000391269 118 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 RNU6-195P-201ENST00000411352 109 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AC106883.1-201ENST00000418805 562 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 RPL31P35-201ENST00000431058 377 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 RPL23AP50-201ENST00000434149 455 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 TPT1P7-201ENST00000458300 517 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 HMGN2P26-201ENST00000463169 339 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AF235103.2-201ENST00000525753 346 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 BNIP3P39-201ENST00000601077 554 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 RNU6-85P-201ENST00000605989 107 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 MIR7844-201ENST00000616161 122 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AC139792.3-201ENST00000623525 224 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AC010608.3-201ENST00000625048 527 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 MIRLET7C-201ENST00000362160 84 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 MIR1912-201ENST00000410389 80 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 MTCYBP10-201ENST00000424905 650 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AC007215.1-201ENST00000464893 276 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 RNU6-1198P-201ENST00000516904 67 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 MIR3192-201ENST00000584920 77 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AC092354.1-201ENST00000606057 376 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 AC073349.3-201ENST00000617616 186 ntBASIC0.08□□□□□ -2.4
KIAA1549Q9HCM3 MTND4P9-201ENST00000507819 1346 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 RNU5B-2P-201ENST00000363036 113 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 SNORA25.3-201ENST00000363205 127 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 Y_RNA.274-201ENST00000364714 101 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 SNORA2.2-201ENST00000365473 135 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 RNY1P8-201ENST00000383970 114 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 MIR329-2-201ENST00000385029 84 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 RNU6-994P-201ENST00000410507 111 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 RNA5SP494-201ENST00000410653 129 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 AC008134.1-201ENST00000420943 193 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 AC073261.1-201ENST00000429409 121 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 SCARNA18-201ENST00000459004 134 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 AC010469.2-201ENST00000496412 480 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 RNU6-1110P-201ENST00000516462 101 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 MTND2P32-201ENST00000521584 1038 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 MIR4778-201ENST00000577635 80 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 AC104695.3-201ENST00000604052 296 ntBASIC0.07□□□□□ -2.4
KIAA1549Q9HCM3 SNORD11B-201ENST00000607707 90 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms