Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
RPAP3Q9H6T3 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
RPAP3Q9H6T3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 RNU1-62P-201ENST00000362599 164 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 SNORD114-27-201ENST00000363766 70 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 Y_RNA.287-201ENST00000364853 94 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 RNU6-534P-201ENST00000364877 106 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 RNU6-245P-201ENST00000384020 107 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 Y_RNA.533-201ENST00000384596 114 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 RNU6-541P-201ENST00000384709 110 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 MIR1253-201ENST00000408273 105 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 MTATP6P13-201ENST00000438531 667 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 RNU6-864P-201ENST00000516256 108 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 SNORD11B-201ENST00000607707 90 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 MIR3662-201ENST00000637030 95 ntBASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
RPAP3Q9H6T3 RNU6-873P-201ENST00000363833 107 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 SNORA25.8-201ENST00000364831 128 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 Y_RNA.319-201ENST00000365138 92 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 Y_RNA.453-201ENST00000384223 109 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 Y_RNA.473-201ENST00000384333 102 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 MIR489-201ENST00000384923 84 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 MIR153-2-201ENST00000385225 87 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 AC016909.1-201ENST00000415916 166 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 FTH1P12-201ENST00000432137 551 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 AC069257.2-201ENST00000441819 155 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 RNU6-718P-201ENST00000516166 105 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 RNU6-1146P-201ENST00000516282 102 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 RNU6-1198P-201ENST00000516904 67 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 AC019176.1-201ENST00000518519 225 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 AC027288.2-201ENST00000553028 243 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 U4.5-201ENST00000617137 123 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 snoZ196.1-201ENST00000625269 89 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 ICE2P2-201ENST00000483823 2787 ntBASIC1.4□□□□□ -2.19
RPAP3Q9H6T3 SNORD1A-201ENST00000364968 72 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 RNY1P14-201ENST00000384426 108 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 Y_RNA.573-201ENST00000384763 105 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 RNA5SP109-201ENST00000391010 116 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 RPL21P1-201ENST00000399532 476 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 AC009161.1-201ENST00000417306 376 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 RPS29P25-201ENST00000481709 171 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 RNA5SP454-201ENST00000517231 127 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 MIR5696-201ENST00000578474 85 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 MIR4273-201ENST00000582824 84 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 AC009248.2-201ENST00000619826 254 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
RPAP3Q9H6T3 MTND4P12-201ENST00000498999 1377 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 RNU1-93P-201ENST00000364704 169 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 SNORA72.2-201ENST00000365028 127 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 Y_RNA.415-201ENST00000384012 112 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 RNU6-1215P-201ENST00000384441 102 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 USP9YP30-201ENST00000430729 455 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 AL135790.2-201ENST00000437701 267 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 AC005002.2-201ENST00000438228 269 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 RNU6-221P-201ENST00000459541 99 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 AC025647.1-201ENST00000517879 253 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 AK6P2-201ENST00000549020 471 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 AC005668.1-201ENST00000571142 476 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 MIR6128-201ENST00000615528 109 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 MIR3688-2-201ENST00000636963 87 ntBASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
RPAP3Q9H6T3 MIR302D-201ENST00000362275 68 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 Y_RNA.157-201ENST00000363638 102 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 RNU6-17P-201ENST00000384245 107 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 RNU6-18P-201ENST00000384527 107 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 MIR618-201ENST00000385287 98 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 RNA5SP118-201ENST00000410385 109 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 AC243428.1-201ENST00000421099 264 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 AC010154.1-201ENST00000425857 269 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 AL606517.2-201ENST00000442855 241 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 snoU13.27-201ENST00000459278 104 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 snoU13.18-201ENST00000459483 104 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 RPS26P55-201ENST00000471178 356 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 AL163195.1-201ENST00000496941 348 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 RNU4-49P-201ENST00000516080 140 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 AC019288.1-201ENST00000557918 224 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 AP003465.2-201ENST00000602571 373 ntBASIC1.37□□□□□ -2.19
RPAP3Q9H6T3 RNU6-137P-201ENST00000363680 108 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms