Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNU6-566P-201ENST00000516790 107 ntBASIC1.94□□□□□ -2.1
CHMP4AQ9BY43 APOOP3-201ENST00000536787 586 ntBASIC1.94□□□□□ -2.1
CHMP4AQ9BY43 AC139792.2-201ENST00000624218 587 ntBASIC1.94□□□□□ -2.1
CHMP4AQ9BY43 AC027514.1-201ENST00000588561 1603 ntBASIC1.94□□□□□ -2.1
CHMP4AQ9BY43 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 RNU6-17P-201ENST00000384245 107 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 RNU6-18P-201ENST00000384527 107 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 Y_RNA.533-201ENST00000384596 114 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 RNU6-331P-201ENST00000384724 107 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 MIR562-201ENST00000384894 95 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 USMG5P1-201ENST00000425964 177 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 AC108667.1-201ENST00000428618 249 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 RPL30P10-201ENST00000488148 337 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 RNU7-175P-201ENST00000515915 61 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 AL512310.8-201ENST00000550183 120 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 AL442163.3-201ENST00000554110 156 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 MIR4790-201ENST00000577799 79 ntBASIC1.93□□□□□ -2.1
CHMP4AQ9BY43 RNU6-1059P-201ENST00000363752 98 ntBASIC1.92□□□□□ -2.1
CHMP4AQ9BY43 MIR618-201ENST00000385287 98 ntBASIC1.92□□□□□ -2.1
CHMP4AQ9BY43 RPL21P1-201ENST00000399532 476 ntBASIC1.92□□□□□ -2.1
CHMP4AQ9BY43 MIR1277-201ENST00000408536 78 ntBASIC1.92□□□□□ -2.1
CHMP4AQ9BY43 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.92□□□□□ -2.1
CHMP4AQ9BY43 AC016909.1-201ENST00000415916 166 ntBASIC1.92□□□□□ -2.1
CHMP4AQ9BY43 AC023790.1-201ENST00000482174 347 ntBASIC1.92□□□□□ -2.1
CHMP4AQ9BY43 CYCSP23-201ENST00000519781 313 ntBASIC1.92□□□□□ -2.1
CHMP4AQ9BY43 AC027288.2-201ENST00000553028 243 ntBASIC1.92□□□□□ -2.1
CHMP4AQ9BY43 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.92□□□□□ -2.1
CHMP4AQ9BY43 MIR378A-201ENST00000362177 66 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 U8.1-201ENST00000362843 134 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 Y_RNA.86-201ENST00000363020 111 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 RNU6-727P-201ENST00000363592 107 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 RNU6-873P-201ENST00000363833 107 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 RNU1-42P-201ENST00000364033 160 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 SNORA17.3-201ENST00000391159 129 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 AL034345.1-201ENST00000407768 123 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 MIR1304-201ENST00000408243 91 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 AL139396.1-201ENST00000421137 167 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 SDAD1P3-201ENST00000427380 333 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 USP9YP30-201ENST00000430729 455 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 AC011352.1-201ENST00000512300 793 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 RNU7-99P-201ENST00000516271 62 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 AC068790.6-201ENST00000602558 258 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 MZT1P2-201ENST00000604387 248 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 AL513423.1-201ENST00000621695 132 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 AC099654.5-201ENST00000636479 350 ntBASIC1.91□□□□□ -2.1
CHMP4AQ9BY43 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.9□□□□□ -2.1
CHMP4AQ9BY43 ZNF209P-201ENST00000593450 2304 ntBASIC1.9□□□□□ -2.1
CHMP4AQ9BY43 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 MIR26B-201ENST00000362251 77 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 SNORD87-201ENST00000364849 89 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 RNA5SP259-201ENST00000365541 109 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 RNU6-1031P-201ENST00000384773 107 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 RNU6-159P-201ENST00000391080 106 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 MRPL42P3-201ENST00000401492 326 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 AC093303.1-201ENST00000514549 295 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.682-201ENST00000516457 100 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 DNAJC19P9-201ENST00000555084 351 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 UBL5P4-201ENST00000562584 236 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 MIR5696-201ENST00000578474 85 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 SNORA28-201ENST00000606769 126 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 AC007014.2-201ENST00000615581 479 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 AC009248.2-201ENST00000619826 254 ntBASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
CHMP4AQ9BY43 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.48-201ENST00000362710 103 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.140-201ENST00000363474 103 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 SNORA4.2-201ENST00000365313 147 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 RNA5SP504-201ENST00000410676 117 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 TOMM22P2-201ENST00000430735 237 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 AL603825.1-201ENST00000438481 80 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 MTND1P17-201ENST00000448961 204 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 RPL39P38-201ENST00000467018 153 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 MIR4303-201ENST00000581299 66 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 AC018638.8-201ENST00000588755 281 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 AC002553.4-201ENST00000616896 331 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.89□□□□□ -2.11
CHMP4AQ9BY43 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 SNORA33-201ENST00000363664 130 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.179-201ENST00000363844 90 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.301-201ENST00000364990 103 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.405-201ENST00000383979 100 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.451-201ENST00000384200 100 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.524-201ENST00000384564 100 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 Y_RNA.561-201ENST00000384694 100 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 RNA5SP467-201ENST00000391274 118 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 FCF1P9-201ENST00000412546 282 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 AC243428.1-201ENST00000421099 264 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 AL590705.4-201ENST00000532209 134 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 MIR4742-201ENST00000581069 85 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 U6.73-201ENST00000619194 103 ntBASIC1.88□□□□□ -2.11
CHMP4AQ9BY43 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms